Asparagus officinalis (garden asparagus): 109851011
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Entry
109851011 CDS
T05243
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109851011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109851011
Enzymes [BR:
aof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109851011
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109851011
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109851011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
109851011
NCBI-ProteinID:
XP_020276702
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Position
7:complement(149230969..149242106)
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AA seq
605 aa
AA seq
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MLSVLRVHLPSEIPIVGCEITPYVLLKRPDNSISNEDVPESTPIGGYCMRYKWYRVHNDR
KVAVCSVHPTEQATLQCVGCVKMKIPVAKSFHCSSRCFADAWQHHRVLHERALSTLNENG
NEEEELYGRLNSSGSGIVNAGLSSSTTGVGQNPSLNNISTPLYPATITERSGGETWSEVG
RSRTYTPTAEDIGHVLKFECVPIDAETKIPLGTPSTFLTSRVIPAPSPTPRRMIPVNGLD
IHGQLNLDGRTSLSGTFTVLSYNILSDAYATSESYSYCPSWALSWTYRRQNLLREIIGYH
ADILCLQEVQSNHFDEFFAPELDKHGYQGLYKKKTSEVYNGNPNAVDGCATFFRRDKFSH
VKKYEVEFNKAAQSLTEAVIAAGQKKVALSRLIKDNIALIVVLEAKFNNQGQGTDTPGKR
QLLCVANTHVNVHQDHKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSASHTLL
AMGKVDPMHPDLTVDPLNILRPSTKLNHQLPLVSAYSSVARMVGLEQRRKLDPSTNEPLF
TNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHVALLAEFRCK
PRVRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgcttagggttcatttgccgtccgagatccccatcgttggctgcgagatc
acgccgtatgtgctcttgaagcggccggataattcgatctcgaatgaggacgtccctgaa
tcaaccccgatcgggggctattgcatgagatataagtggtaccgtgtacacaatgaccgt
aaagtggctgtctgcagtgtgcatccaactgaacaagcaacgttgcagtgtgttggttgc
gtgaagatgaaaataccagttgccaagagttttcactgctcatcaaggtgcttcgctgat
gcgtggcagcatcatcgcgttttacatgagagagcccttagcactttaaatgaaaatgga
aatgaagaagaagagttatatggtcgccttaatagtagtggatctggaattgtcaatgct
gggctttctagttcaacaacaggtgtaggacagaacccaagtttgaacaatatttccaca
cctttatatcctgcaactattacagagcggagtggaggtgaaacctggtctgaagttggg
cgctctagaacatataccccaactgctgaagatattggtcatgtgctcaagtttgaatgt
gtacctatagatgcagaaacaaagattcctcttggaacaccaagtacttttttgacctca
cgtgttattccagctccgtcacccactccacgccgtatgattcctgtaaatggacttgat
attcatgggcagctgaatcttgatggtcgaacttcattgtctggaacattcactgtgcta
tcatataacattctttctgatgcatatgcgacaagtgagtcatacagctattgcccatct
tgggccctttcttggacttaccggaggcaaaatttgttgagagaaattatcggctatcat
gctgatatcctttgtcttcaggaggttcaaagtaatcatttcgatgagttttttgctcca
gaacttgacaagcatggatatcagggactttacaagaagaaaacatccgaggtttataat
ggaaatccaaatgcagttgatggttgtgcgacatttttccgcagggacaaattttcacat
gtcaaaaaatatgaggttgagttcaataaggctgcccagtctttgactgaggctgtaatt
gcagctggtcagaagaaagttgctctgagtagattgatcaaggataatattgctcttatt
gtggtccttgaagcaaaattcaataaccaggggcagggtactgatactcctggaaagaga
cagctcctctgtgtggcaaatacacatgtcaatgttcatcaagatcacaaggatgtaaag
ctctggcaggtgcatactcttttgaaagggctggagaaaatagctgttagtgcagatata
cccatgttggtgtgtggagattttaattctgttccagggagtgcttctcatacgctgctt
gcaatgggtaaggttgatccaatgcatccggacttgactgtggacccccttaatatttta
cgcccttcaacaaagctaaaccaccagctcccactggtcagcgcatactcatccgtcgca
agaatggttgggttagagcagagaagaaagttggatccatcaacaaatgaacctttgttc
acaaattgtaccagggatttcattgggacactggattacatattttacacagcggactcg
ttgacagtggaatcactgttggaactcttggatgaggaaagcttgcgcaaagatacagca
cttccctctccagagtggtcctctgatcatgtagcacttttagctgaattccgatgcaaa
cctagggtcagacgttga
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