Asparagus officinalis (garden asparagus): 109851034
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Entry
109851034 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109851034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109851034
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109851034
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109851034
mRNA degradation factors
3'-5' decay
Ski complex
109851034
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
109851034
NCBI-ProteinID:
XP_020276730
LinkDB
All DBs
Position
7:1048651..1083071
Genome browser
AA seq
1317 aa
AA seq
DB search
MDRITAANEVAFRVGFSGHSGHLRLEPLPPVERSNPLKSLPDFVLPPASLQETPESVKKY
LEEKYLQPRLDPDEFSVENSGRQWDFDWFDRAKVPLEPSAPRSLVVPAWELPFRRSRNKT
PSGAWDPASIEADVAEILGGAQDSGTTPRMPGPAKDFVRGSVNNRPFRPGGLVDSPSEKS
LPEGAKSGDWVHEIVDGGVAQSVPPSFKKGLDLGCLKQRPCHWKLVDSKISTTTSVSGKN
LARLSVQFDELFKKAWEEDIVVEGATSDDPVSADKQVEEKEDGILDTIPIFDTNPKSESF
DLDKILLEEPRKIDAELHRGSTSSKQQKGEAWALPGGNEEIANHFDELVPDMALDFPFEL
DKFQKEAIYYLEKGDSVFIAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYR
DFCGKFDVGLLTGDVTLKPESSCLIMTTEILRSMLYRGADIIRDVEWVIFDEVHYVNDVE
RGVVWEEVIIMLPRHVNIVLLSATVPNTTEFADWIGRTKQKKIRVISTTRRPVPLEHCLF
YSGELYKICENEAFLPQGLKAAKDACKRKNSNIASGSSGKILGATSPHGAGQNRQRETSN
RWKGQKHSGPQNVAKVSGQSGGQQSNWGSSRSEASLWLLLVNKLSKKSLLPVVIFCFSKN
RCDKSVDNMTSIDLTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHA
GLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKDFRKLLPGEY
IQMAGRAGRRGLDKIGTVIVMCRDEIPEESDLKHVIVGKPTRLESQFRLTYTMILHLLRV
EELKVEDMLKRSFAEFHAQKNLPEKEKLLLIKLSQTTKTIDCIKGEPAIEQYVEMASNAE
IYRDAISKAVMQSRLAQPFLSPGRVVVVRYQLEEDHLLGVILKTPSAMNKQYIVLVLTTD
VASMQTHKGPLNTPQEKGSGNPPEGYFIAPKGKRGMDEEYFSSVSSRKGSGIINIKLPYR
GNAAGVNYEVIAVDDRDIMSICNCKIKIDQVRLLEDPSNVAYSKTVQQLLDQKRNGSKYP
PVLDAVKDLKLNDMAVVEEYRSYNKLLQMMSENKCHGCIKLKEHTIWAKEQKRHKEELNA
LKYQLSDEALQQMPDFQGRIDVLKEIHCIDPDLVVQIKGRVACEMNSGEELISTECLFEN
QLDDLEPEEAVALMSALVFQQKNTSEPSLTPKLAHAKKRLYDTAIRLGELQVQCNVSIDP
EEYAQVNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAA
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatcactgcagcgaacgaggtcgccttcagagtagggttttctggccacagc
ggccatctaaggctcgagccccttcccccggtggagcggtcgaatcctctgaaatctctc
cccgatttcgtcctcccgccagcgtccctgcaggaaacaccggagagcgtgaagaaatac
ctagaggagaagtacctgcagccgagattggatcccgatgagttctccgtcgagaatagt
ggacggcagtgggatttcgattggtttgatcgggcaaaagtgccgctggagccttcggct
cctcggtcccttgtcgtccccgcttgggaattgcctttcaggcgatccaggaacaaaact
ccttcgggggcttgggatcccgcctcgattgaggcagacgtagcggagatattaggagga
gcccaggattctggtacaacaccacggatgcctgggcctgcgaaggattttgtaaggggg
agcgtcaataaccgcccttttcgcccgggcggtcttgttgactcaccttcggagaaatct
cttcccgagggtgctaaaagtggtgattgggtgcacgagattgttgacggcggtgttgct
cagtctgttcctcctagttttaagaaaggactggatttaggctgtctcaagcaacgcccg
tgccattggaagcttgttgacagtaagatctccactactacgagtgtttctgggaagaat
ctggctaggttgtctgtgcaatttgatgagttattcaagaaggcttgggaagaagatatt
gttgttgaaggagcaacaagtgacgatccggtttctgctgacaaacaagtcgaggaaaaa
gaggatggtattcttgacactattcctatttttgatactaaccctaaatctgaatccttc
gatttagacaagattctactggaggaaccaagaaaaatagatgcagagctacacagaggg
agcacaagtagtaaacaacaaaaaggggaggcttgggctctcccaggggggaatgaggag
attgcaaatcactttgatgaacttgttcctgatatggcacttgattttccattcgagttg
gataaattccaaaaggaggctatatattatcttgagaaaggtgattctgtttttatagct
gctcatacttcagctggaaagacagttgttgcagaatacgcatttgctttagcatcaaag
cactgcactagggctgtgtatactgctccaataaaaactattagcaaccaaaagtatagg
gatttctgtgggaagtttgatgttggtcttcttactggagatgttaccttgaagccagag
tcatcttgcctcatcatgactactgaaattttgaggtcaatgctttacagaggtgctgat
attattcgtgatgttgaatgggttatatttgatgaagtgcattacgtaaatgatgttgaa
aggggtgttgtttgggaagaagttataattatgcttccaagacatgtcaatattgtcctc
ctttctgccacggttcccaacacaactgaatttgcggattggattggacggaccaagcaa
aagaaaattcgtgtgatatcgaccacgaggaggccagttcctcttgagcactgcttattc
tattctggggaactgtataaaatatgtgagaatgaggcatttctgccccaggggctaaaa
gcagcaaaggatgcttgtaagcgaaaaaattcaaatatcgccagtggaagttccgggaaa
attttgggagcgacatcaccccatggtgcaggccaaaacaggcagcgtgaaacttctaac
cgatggaaaggtcaaaaacactctgggcctcaaaatgtagccaaggtttctggacaaagt
ggaggacaacaaagtaactggggttcaagcagatcagaggcttctttgtggttgttgcta
gtaaacaagctttcgaagaagtcattattgcctgtggttatcttctgcttctctaagaac
cgttgtgacaaatcagtagataatatgacaagtattgatcttacaagcagttccgagaaa
agtgaaatacgcctcttttgtgacaaggcattttcacggctaaagggatctgataggaac
ctgccacaggttgtcagagttcagaacctactgcgaagagggattggcgtgcaccatgct
ggtcttcttccaatcgtgaaggaagttgttgagatgctcttttgtcgtggtgtgattaag
gttttattttcaacagagacatttgccatgggggttaatgctcctgccagaacagttgtc
tttgatacattaaggaagtttgatggcaaagatttcaggaaactactccctggggaatat
atccaaatggctggacgtgctggaaggagaggacttgataagattggtacagtaattgtt
atgtgtcgtgatgagatcccagaggagagtgacttgaaacatgttatagttggaaaaccg
actcgacttgaatcacagtttcgattgacctacaccatgattctacatctccttcgtgtt
gaagaattgaaggtggaggacatgctgaaaagaagttttgcggaattccatgctcaaaag
aacttgcctgagaaagagaagcttcttttgataaagctatcacaaactaccaaaaccata
gattgtataaaaggagaaccggctattgagcagtacgttgagatggcttcaaacgcagag
atatacagagatgctatatcaaaggcagtcatgcaatcacgtctagctcaaccgtttctc
tctcctggtagagtggtggttgtcagatatcagttagaggaagatcacttacttggtgtc
atcttgaaaacaccttctgctatgaacaaacaatatattgttttagtattgacaactgat
gtggcctctatgcaaactcacaaaggtcccttgaatacacctcaagagaaaggaagtggc
aatccccctgaaggatattttattgctccaaaaggaaagcgtggaatggatgaagagtat
ttttcatctgtcagttctcgtaaaggatctggcatcataaatatcaagttgccttaccgt
ggtaatgctgctggtgtaaactatgaagttatagcagtagatgatagagatattatgagt
atatgcaattgcaaaataaagattgatcaagtccggcttcttgaagatcccagcaatgtt
gcttactcaaaaactgtccaacagcttttagatcagaaacgtaatggaagtaaataccct
ccagtgctggatgctgttaaagatctcaagttgaatgacatggctgttgtggaggaatac
cgcagctataataaactattgcaaatgatgtcagagaacaagtgccatgggtgtattaaa
ttgaaggaacatactatctgggccaaggagcaaaagaggcacaaggaggagctcaatgct
ttgaaatatcagttgtctgatgaagcacttcagcagatgccagattttcagggtcgaatt
gatgtgttgaaggaaatccattgcattgatcctgatctcgtagttcagatcaagggccgt
gtggcatgtgagatgaattctggagaagaactgatatccacagaatgtttgtttgagaac
cagttggatgatctggagcctgaagaagctgtagcgcttatgtctgcacttgttttccag
cagaagaacacatctgaaccatctcttactccaaaactggctcatgcaaagaagaggctg
tacgatacagcaataagactcggggagctccaagtacaatgcaatgtatccatcgaccct
gaagagtatgcacaagtcaacctcaaatttggcctggtcgaagtcgtttatgaatgggca
aagggaacaccgtttgctgatatttgcgagcttactgatgtcccagaaggcttgattgtt
aggactattgtcaggttggatgaaacatgccgtgagttcaggaatgctgcataa
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