Asparagus officinalis (garden asparagus): 109851047
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Entry
109851047 CDS
T05243
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109851047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109851047
03009 Ribosome biogenesis [BR:
aof03009
]
109851047
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109851047
Spliceosome [BR:
aof03041
]
Complex A
U2 snRNP components
U2 related factors
109851047
Complex B
109851047
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109851047
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
90S particles
Helicases
109851047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
ResIII
nSTAND3
AAA_30
T2SSE
Flavi_DEAD
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
109851047
NCBI-ProteinID:
XP_020276751
LinkDB
All DBs
Position
7:complement(37734503..37748206)
Genome browser
AA seq
727 aa
AA seq
DB search
MSSERKRKISLFDVVDETTISAKLARDTNSGAAGTSNGSTSIPPSINRWNGRPYSQRYFE
ILEKRETLPVWQQKDEFMQVLRSNQTLILVGETGSGKTTQIPQFVLEYDGLGKRGMVACT
QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTILKYLTDGMLLREAMADPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMK
VPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKE
VNNLGDQVGPVKVVPLYSTLPPAMQQKIFEAAPPPIKEGGPSGRKIVVSTNIAETSLTID
GIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
EGNLTKLGEIMSEFPLDPQMSKMLVVSPDFNCSIEIVSISAMLSVPNCFLRPRDAQKAAD
EAKAHFGHIDGDHLTLLNVYHAYKQNSEDPSWCYENFINQRAMKSADNVREQLVRIMARF
NLKLCSTDFSSRNYYINIRKALLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRQREK
GESKSQN
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagagaggaaacgaaagatcagcctcttcgacgtcgtcgacgagaccacaatc
tccgccaagctggccagggacaccaactccggcgccgccgggaccagcaacggatcgacc
tcgatccctccatcgatcaatcgatggaacgggcgtccttattctcagaggtacttcgag
atcttggagaagagggagactctcccagtttggcagcagaaagatgagttcatgcaggtt
ctcaggtcaaatcagactttaattttggtcggggagactggaagtgggaagactactcag
attccacaatttgttctggaatatgatgggttaggcaaacgtgggatggttgcttgcacc
caacctcgtagagttgctgcaatgtctgtctctcgtcgagttgcagaggagatggatgtg
actattggtgaagaagttggatacagcattcgttttgaagattgcagtagtcataaaact
attctgaagtacttaacagatggtatgcttttaagagaagcaatggctgacccacttctg
gagagatataaggtgataattcttgatgaagcacacgagcgaactttggcaacagatgtt
ttgtttgggcttcttaaagaagttctaaaaaacagacctgaccttaaactagttgtcatg
agtgcaacacttgaggctgagaaattccagggttactttagtggtgcaccattgatgaaa
gtacctggaaggttacatccagtggaaattttctatacgcaggatcctgaaagagattac
ttggaagctgcaatccggacagttgtgcagatacatatgtgcgaaccaccaggtgatata
cttgtattcttgactggcgaagaggagatagaagatgcatgtcgaaaaataaataaggaa
gtcaataatttgggtgaccaagttggtccggtgaaagtggtgcctctttattctacatta
cctccagctatgcaacagaaaatatttgaggctgccccaccaccaataaaggaaggtggt
ccctctggaaggaagatcgtggtgtccactaacatagcagaaacatcactgactattgat
ggtattgtttatgttattgatcctggattctctaaacagaaggtctataatcctcggatt
cgtgttgagtctttgcttgtctcaccaatatcaaaggcaagtgctcatcaaagatcagga
cgtgcggggagaacacaacctggaaaatgcttcagactttacacggaaaagagttttaat
aatgatttacagccacagacctatcctgaaattctccggtctaatctagcaaatacagtt
ctcaccttgaagaagcttggcattgatgaccttgtacattttgactttatggaccctcca
gcccctgaaactctgatgcgtgcattggaggttttgaactacctaggtgctctggatgat
gaagggaacttgacaaagttaggtgaaatcatgagtgagttccccttggatcctcagatg
tcaaagatgcttgttgtcagtcccgattttaattgttcaattgagatcgtatccatatca
gcgatgctttcagtaccaaattgctttctccggcctagagacgctcagaaagctgcagac
gaagcgaaagctcattttggccacattgatggagatcacctcacactgctaaatgtttac
catgcatataagcaaaatagtgaggatccttcgtggtgttatgagaattttatcaatcaa
agggcaatgaagtctgctgacaatgtgagggaacagcttgtgcgcatcatggctagattc
aacctcaaactgtgcagcacagatttcagtagccgcaattattacatcaatatcagaaag
gctctgctttcagggtactttatgcaggtagctcatcttgaacgcactggtcactatttg
acagtgaaggacaaccaggtggtgcatctccatccttcaaactgcctggatcacaagcct
gagtgggtaatttacaacgagtatgttttgaccagcagaaactttatccgcacggttaca
gatgttcgtggagagtggttgatcgacatagctccacactactatgatctaagcaacttc
ccctcatgtgaggcaaagcgcgtacttgagagactctacaataaacgccagagagagaaa
ggggaaagcaaaagccaaaattaa
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