Asparagus officinalis (garden asparagus): 109851275
Help
Entry
109851275 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109851275
03041 Spliceosome [BR:
aof03041
]
109851275
03036 Chromosome and associated proteins [BR:
aof03036
]
109851275
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109851275
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109851275
mRNA cycle factors
Common to processing body (P body) and stress granule
109851275
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109851275
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109851275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109851275
NCBI-ProteinID:
XP_020276925
LinkDB
All DBs
Position
8:complement(15717153..15729545)
Genome browser
AA seq
578 aa
AA seq
DB search
MRTSWADSVANAESSGAAGAGNDSRPARASYVPPHLRNRQPSSDAAPPPSQSDGXXXXXX
XXGREREVNPFANDEETPDPAFDQENTGINFDAYEDIPVDTSGDNVPPPVNTFAEIDLGE
ALNENIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKAQMVQ
RPRGSRTVYPLALILSPTRELSVQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGV
DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPQRGQRQ
TMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHA
QRANGTHGKQSLTLVFVETKRGADALEYWLCQNQFPATSIHGDRSQQEREYALRSFKSGT
TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNSN
LARPLAELMQESNQEVPAWLSRYAARSSFGGGGRNKRGVPFGADIEVXAAALHAVIWGDH
PQHVTGGGGDGGGGYGGGGGYGGGGYSGGGAGFTSAWD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacttcttgggccgactctgttgccaatgctgagagctccggtgctgctggtgcc
gggaatgactctcgtcctgcccgtgcttcttatgtccctccccatctgcgtaaccgccag
ccatcctccgatgctgcaccacctccatctcaatctgacggcnncnnnnnnnnnnnnnnn
nnnngaggtagggaacgtgaagtgaacccttttgccaacgacgaagaaacccctgaccca
gcttttgatcaagaaaacactggtatcaattttgacgcctatgaggacatccctgtggac
actagtggtgataatgtgccaccacctgtgaacacttttgcggagattgatctcggtgag
gctttgaatgagaatataaggcgatgcaaatacgtgaagcctactcctgtccaacgccat
gctataccaatatcgcttggaggccgtgatctaatggcctgtgctcagactggatcgggc
aagacggcagctttctgctttccaatcataagtggaattatgaaggcacagatggtgcag
aggccaagaggttctcgaactgtatacccactagctcttatcctatcaccaactagggag
ctttctgtccaaatacatgaggaggctcgaaagttctcttatcagaccggagtaagagtt
gttgttgcttatggaggtgctccaattaatcaacagttgcgagaactggaaagaggggtt
gatattcttgtggcaactcctggccgtctggtggatttacttgagagagccagagtttca
ttacaaatgatcagatatttggcccttgacgaggcagatagaatgctggatatggggttt
gagccccaaattcgaaaaattgttgaacagatggacatgcctcaacgaggtcaaaggcaa
acaatgctttttagtgctacatttcctaaagaaatccagagattggcttctgattttctt
tccaattacatcttccttgctgttggaagggttggttccagtactgatctaattgttcag
agagtagaatttgttcttgaatctgataaaagaagccatcttatggatcttctccatgct
caaagagcaaatggaactcatgggaagcaatctctaactttggtctttgtggagactaaa
agaggagctgatgcattagaatattggttatgtcaaaatcagtttccagcaactagtatt
catggtgatagatcacagcaggaacgagaatatgctcttagatccttcaagagtggcaca
acccccatactagtagccacagacgtcgcggcacgtggtctcgacatcccccacgttgca
catgtcgttaactttgacctccccaacgacattgatgactatgtgcatcggattggacga
acagggagagccggcaaatccggcctcgccaccgctttcttcaatgagagcaactccaat
cttgcaaggccgcttgccgagctcatgcaggagtccaatcaggaagtcccagcttggtta
tctcgctacgctgctcgctcttcatttggcggtggtggcaggaacaaacgaggtgtgccg
ttcggtgcggatatcgaagtatgagcggcagccctgcatgctgtgatatggggtgaccat
cctcagcatgttactggaggtggtggtgatggtggtggtggttatggtggtggtggtggt
tacggtggcggtggttattctggtggtggtgctggatttaccagtgcgtgggattaa
DBGET
integrated database retrieval system
