Asparagus officinalis (garden asparagus): 109851289
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Entry
109851289 CDS
T05243
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109851289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109851289
03036 Chromosome and associated proteins [BR:
aof03036
]
109851289
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109851289
Coactivators
SAGA/TFTC/STAGA complex
109851289
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
109851289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
109851289
NCBI-ProteinID:
XP_020276937
LinkDB
All DBs
Position
8:29907789..29933066
Genome browser
AA seq
933 aa
AA seq
DB search
MPRGGRGGAVAVPPSDIGGDSSTFSQLSDSESGVLPQTGSSASQQLLGHWQNSSQDGNIS
ENIQQKEEPGSQSEHPSSQTESTQQLSSAEGQDQQGSNQTKHDQPQLQLDHSHSDQQLQT
ETSAAQPVDKDQINSSGQTSFQIQKQESSTQYSDSQQQTIDQPLNAEQQTAAANLPFPKQ
ESSTQHSESQQQNIQQQLNVEEQIASGSEAKRMKSSPSIPFQLLIPIVRPHLDKDRAMQL
QSVFTKLRSNEVSKEDFLRVIRNIVGDQMLRQAVNKVHMQLQAQAAKNQQTSPNQYSLQN
QASQQQLLSRGAQQFHDSRAFSLLPRQPVSASTVQMQMDTKFPPIENSSQKSRETEHNSD
GRGMNASQMHSTSKIVSNPEREASIDSIQGINKQQQQLLQPQTSFPMYAGSSSSFHSHPY
ARPPISAATTALRSQHQDSQMRPSPHTQGMAPKKSGPVQPGNALNVPKYELQNIGNDAKR
LHGGPLTSHSSQQLPVSWQPMASKEQRSTSIPSMSHVKQEVVDQANEPSNKSQLTTPHGS
SFGSGNVGQGNPTLGALNSIGSLTTLADSNAQISSPLLAGTTTKTQLKKPSVGQKKPLEA
ASNSSATASKKQKTSGTFHDQSIEHLNDVTAVSGVNLREEEEQLLAAPKEDSRASEATRR
VVQEEEERLILQKGPLQKKLADIMYKTGLKRISNDVERCLSLCVEERLRGVINSLIRLSK
QRVDIEKTRHRFVITSDVRRHILEVNRRAKEEWDKKQAEEAEKNRKVNESDGNGSDVDKD
KDDGRSKANKANKEEDDKMRTTAANVAARAAVGGDDVLSKWQLMAEQARQKREGLDAPSP
SQTGKATSSKPSSGLKRSMKEQQETQRRGSSSSSISGGSRRFGRSPAAISQSKVARNISR
KDIIAVLEREPQMSKSTLIYRLYEKLSGDSAVE
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggggcggacgtggaggcgctgtcgcggtccctccatcggacattggaggggat
tcttccactttctcgcagctctcggattctgagtccggagtgttgcctcaaacgggcagt
tctgcatcacagcagcttcttgggcattggcaaaattccagtcaagatgggaacatcagc
gagaatatccagcaaaaagaagaaccaggctcacagtcagagcatccttcatcacaaaca
gaatctacacaacaattatctagtgccgaaggtcaggatcagcaaggcagtaaccaaacc
aaacatgatcagccacaattgcagctggaccattctcactctgatcagcagttacagaca
gaaacaagtgcagctcaacctgttgacaaagatcagataaatagttctggtcaaacttct
ttccagatccaaaaacaggagagcagcactcagtattctgatagccagcagcaaactatt
gatcagccattgaatgctgaacaacaaactgcagctgctaaccttccgttcccaaaacag
gaaagcagcacacagcattctgagagtcagcagcaaaatattcaacagcaattgaatgtt
gaagaacaaattgcatctggtagtgaagcaaagcggatgaaaagttcgcctagcatacca
ttccagctattgattccaatcgtacgcccacatcttgataaagatagagctatgcagctc
cagtctgtattcactaaactcaggtctaatgaggtcagcaaagaggactttttaagagta
atcaggaatatcgttggggatcagatgctcagacaagcagttaataaagttcatatgcag
cttcaggctcaagcagctaaaaatcagcagacaagtccaaaccaatattccttacaaaat
caagcttctcagcagcaacttttatctcgaggagctcaacagtttcatgattctcgagca
ttttcattgcttccccgccaacctgtctcagcttcgacagtacagatgcagatggatacg
aaatttcctcccattgagaacagtagtcagaaatcccgagaaacagaacataactctgat
ggaagaggaatgaatgcttcccaaatgcattccaccagcaagattgttagcaatccagag
agggaagcttctatagactcaatacaaggaattaacaagcagcaacaacagttgctacaa
ccgcaaacatcatttcctatgtatgctggaagctcgagtagttttcattctcatccatat
gctaggccacctattagtgctgcaactactgctcttagatcacaacatcaggattcacaa
atgaggccatctccacatacacaaggcatggctccaaaaaagtctgggccagttcagcct
ggtaatgcattaaatgtacccaaatacgaactacaaaatattggtaatgatgccaaaaga
cttcatggagggcctttgacaagccattcatcacaacagctcccagtttcatggcaacca
atggcaagcaaagagcaaaggagtacttctatcccatcaatgtctcatgtaaaacaagaa
gtagttgatcaggctaatgagccttcaaacaagtctcagttaactactccacatggctct
tcatttggctctggaaatgttggccaaggaaatccaactctcggtgctttgaatagtata
ggaagtctgacaaccttggcagattcaaatgcacagatttcgtctcctcttcttgctgga
actacaacaaaaacacaactgaagaaaccttctgttgggcagaagaagcctcttgaagct
gcaagtaattcctctgctacagcaagcaaaaagcagaagacatctggcacatttcatgac
caaagcattgagcatttaaatgatgttacagctgttagcggagtcaatttgagggaagag
gaggagcagctacttgctgcccctaaggaggatagccgagcttcagaagcaactaggaga
gttgtccaagaagaagaagaaaggttgattctccagaaaggccctcttcagaaaaagcta
gcggatatcatgtacaaaactggtttgaaaagaatcagcaatgacgtggagcgatgttta
tcattgtgtgtagaggaacgtctgcgaggagttatcaattctttgataagattgtcaaaa
cagagggttgatattgagaagacgaggcaccgttttgtcatcacttcagatgttcgtcgc
catattttggaggtaaataggagggctaaggaagaatgggacaaaaagcaggctgaagaa
gcagaaaagaacagaaaagtcaatgaatctgatggcaatgggtcagatgtagacaaggac
aaggatgatggccgatcaaaggccaacaaggccaacaaggaagaggatgacaagatgaga
acaacagcagcaaatgttgcagcccgagctgctgttgggggagatgatgtgctctcaaag
tggcagctcatggctgaacaagctcgtcagaagcgtgaaggcctggatgctccttctcct
tcacaaacaggtaaagcaacaagcagcaagccttcatcaggcttaaaaagaagtatgaag
gagcagcaagaaactcaaaggagaggttcctcttcctcttcaatttctgggggcagtaga
cgatttgggaggagcccagcagccatatcgcagtccaaagttgcacgaaatatttctcga
aaggatataatcgctgttttggagagggagcctcaaatgtcgaagtctactctaatctat
cgcttgtatgagaaattatctggtgactccgctgtggaataa
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