Asparagus officinalis (garden asparagus): 109851303
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Entry
109851303 CDS
T05243
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109851303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109851303
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109851303
Complex B
109851303
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
109851303
NCBI-ProteinID:
XP_020276950
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All DBs
Position
8:complement(963665..983500)
Genome browser
AA seq
1004 aa
AA seq
DB search
MANNPSGPQFRPVVPPQQGHPYMPPASHQFLPVGQGMAGPNGGMPSPLFAQPPQHMPQRS
GAPGQGFPSSQVTPMSYMQQARPQHNAPVANNHLPNLSGAGMSLSSSYTFATSYGQPPNT
VQATSHYLQVPQMQTSIAPAGGQTWPAPETQNSQLGPPLIQAGQQPSPMAGMVPNSGAHP
SSNEASSSDWQEHTAADGKRYYYNKKTRQSSWEKPIELMTPLERADASTEWKEFTTAEGR
KYYYNKVTKQSKWTIPDELKLAREQAEKEAAQLNVTQTAASADTATSLATANVGTPKVTS
AVASSPVPVTAASAVIPQNVTASGSPPSINIPSVTASSVTSGTTDVGVSLGTPSTPSLPV
SASNGVLSVEMDATTTAVDNDERSSLPNIATPLDGASAQDLEEAKRGMPAAGKINVTPVE
EKFVDEEPLVFANKLEAKNAFKSLLESANVESDWTWEQTMRVIINDKRYGALKTLGERKQ
AFNEYLGQRKKQDAEERRIRQKKAREEFTKMLEECEELTSSTRWSKAVTMFEDDERFTAV
ERPGDRKDLFENYLVELQKKERAKAAEEHKRNIAEYRTFLESCDFIKANSQWRKVQDRLE
DDERCSRLEKIDRLEIFQEYIHDLEKEEEQQKKMQKEQLKRAERKNRDAFRKMMEEDVSS
GLLTAKTHWRDYCVKVKDSPSYLVVASNTSGSTPKDLFEDVSEELEKQYHDDKALIKDAM
KTKKIVLTTTWDFESFKDAVLDDENMKGISEINLKLVFDDLLERLREKEEKEAKKKQRLG
DDFTDLLHSFKEITASSNWEESKVFFEDSQEYKSIDEESFAKQIFEEYVAHLQEKAKERE
RKKEEEKVKKEKEREEKEKRKEKERKEKEREREKEKGKEQDKEREREKEKGKERSKKDES
EIENVDDSRSGKDRKREKDRDRKHRKRHHTSVDDEASDKDEREESKKSRRHSSDRKKSRK
HGYTSDSDTEIRHKRHRKDRDGSRRNGAYEELEDGELGEDGEIR
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatccttccgggccacagttcagacctgtggttccacctcaacagggtcat
ccatacatgcctccggcatcccatcagttcctccctgttggacaagggatggctggacca
aacggtggaatgccatcacccctttttgcgcagccaccacagcatatgcctcagaggtct
ggagctccaggtcaaggtttcccttcgtcgcaagtgactccaatgtcatacatgcagcaa
gctaggccacaacacaatgcaccagttgcaaacaaccatttgcctaatttaagtggagct
ggaatgtctctttcttcatcgtatacatttgctacctcctatggccagccaccaaatact
gtccaggctacatcacattacctacaagtcccccaaatgcagacatctattgcacctgca
gggggtcagacttggcctgcacctgaaactcagaattcgcagcttggtccccctctcatt
caggctggacagcagccttcacctatggctggcatggttcctaattcaggcgcacatcct
agctccaatgaggcatcctcttctgattggcaagaacatacagctgctgatgggaaaaga
tactattataacaagaagaccaggcaatccagttgggagaagcccattgagctgatgacg
ccccttgagagggctgatgcatctactgagtggaaggagttcacaactgcagagggacga
aaatattactataacaaggttacaaaacaatccaaatggactattcctgatgaactcaag
ttagcacgagaacaagcagagaaggaggcagctcagcttaatgtgacacaaacagcagct
tctgctgatacagctacttctttggccacagcaaatgttgggactcctaaagtgacatct
gcagtagcatctagtccagtaccagtgacggctgctagcgctgtcatcccacaaaatgta
acagcgtcaggatctccaccttcaatcaatataccttctgttacagcttcttctgttacc
tctggaacaacagacgtaggtgtgtctcttggcactccttccacaccatcactccctgtt
tctgcaagtaatggagttctttctgttgaaatggatgctacaacaactgcagtggacaat
gatgaacgttcatctttgccaaacattgcaaccccgcttgatggagcttctgctcaggat
ttggaggaagccaaaaggggtatgcctgcagctggaaagataaatgtcactcctgtagag
gaaaagtttgtggatgaggaacctcttgtttttgcaaacaaactggaggcaaaaaatgcc
ttcaagtcacttcttgaatctgcaaatgtagaatctgattggacttgggagcagaccatg
agagttattataaatgacaagagatatggtgctttaaagacgcttggggagaggaaacaa
gcattcaatgagtacttgggccaaaggaaaaaacaagatgctgaagagaggcgcatcaga
cagaaaaaagcacgagaggagttcactaaaatgttagaggaatgcgaagaactcacatca
tccacccgatggagcaaagccgtaactatgtttgaagatgatgaacgattcactgctgtt
gagcggcctggagaccgcaaggatctctttgaaaactatctggtggagcttcagaagaag
gaaagagcaaaagcagcagaagagcacaagcgaaacattgcagaatatagaacttttctt
gaatcatgcgacttcatcaaggcaaacagtcaatggaggaaagttcaggatcgcctggag
gatgatgagagatgttctcgacttgagaaaattgatcgactggagatttttcaggagtat
attcatgatctggagaaagaggaggagcagcagaaaaagatgcagaaggagcaattaaaa
cgggcagaacgcaaaaatcgggatgcattccgcaagatgatggaagaagatgtttcttca
ggtttgcttacagctaaaactcactggcgagattattgtgtaaaggtcaaggattcacca
tcctacctagtggtggcatcaaatacgtcaggttcgacacctaaagacctctttgaagat
gtttcagaggagcttgaaaagcagtaccatgatgataaggctctgatcaaggatgcgatg
aagactaaaaagattgttctgacgacaacatgggattttgaaagtttcaaagatgctgtt
ttggatgatgagaatatgaagggaatatcagagataaacttaaagctcgtatttgatgac
ttacttgaaaggctgagagagaaggaagagaaagaagccaaaaagaagcaacgtcttgga
gacgatttcacagatcttctgcattcattcaaggaaataactgcatcttcaaactgggaa
gaaagcaaagtgttttttgaagatagccaagagtacaagtccattgatgaggagagcttt
gcaaaacaaatatttgaggagtatgttgcacacttgcaagaaaaggcaaaagagagagag
cgcaagaaagaagaagagaaggtgaagaaagaaaaggaacgagaagagaaagagaagagg
aaggagaaggagagaaaggagaaagaaagagaacgcgagaaggagaaaggaaaggagcaa
gacaaagaaagggaacgcgaaaaggagaaaggaaaggaaaggtctaaaaaggatgaatca
gagattgaaaatgttgatgatagtcgtagtggaaaggacagaaagagagaaaaagacaga
gatagaaagcatcgaaagcgtcatcacacttcagtagacgatgaagcctccgataaagat
gagagagaggagtcgaagaaatcgcgtaggcatagcagtgatcgcaagaaatctagaaag
catggatatacttcagattctgataccgaaatccgtcacaaaaggcacaggaaagatcga
gatgggtctcgtagaaatggtgcttatgaagagcttgaagatggagaacttggagaggat
ggggaaatccgttag
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