Asparagus officinalis (garden asparagus): 109851462
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Entry
109851462 CDS
T05243
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109851462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aof04131
]
109851462
Membrane trafficking [BR:
aof04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109851462
Hops complex
109851462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf_RING_Vps8
zf-RING_Vps41
zf_RING_Vps8_fungal
Nup54_57_C
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
109851462
NCBI-ProteinID:
XP_020277185
LinkDB
All DBs
Position
8:complement(108435745..108478457)
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AA seq
990 aa
AA seq
DB search
MDPTSARAFSVDLLVGHASKGHGVITSMAAGNDVIVLGTSKGFLIRYDFNMADSFDLDLS
GGRGGDQQVHRVFLDPGGSHCIVTVVGSGGAESYYTHAKWAKPRILTRLKGLVVNAVAWN
RQQITEASTREVILGTENGEIYEMAVDEADKKEKYVKLLFELTELPEAIMGLQMETAAVI
SSTRYYVMAVTPTRLYSFTGIGSLETVFASYSDRAVHFMELPGEIPNSELHFFIHQRRAK
YFAWLSGAGIYHGDLNFGAQHSSTSGDENFVENKGLLDYSKLGDCVKPRSLAVSEFHYLL
LMGNKVKVLNRISQQIVEELKFNHASDSVSNGIIGLCSDATAGVFFAYDESSIFQVSVHD
EGRDMWQVYLDMKEYAAALAHCRNPFQRDQVYLVQADAAFCAKDFYRAASFYAKINYTLS
FEEISLKFIAIGEQDALRTFLLRKLDNLTRDDKCQITMISTWTTELYLDKINRLLLEDDT
ATVNNVSFASSDSDYQSIIMEFRAFLSDSKDVLDEATTMRLLESYGRVDELVFFASLKEH
YEIVIHHYIQQGETKKALEVLQKPNVCIDLQYKFAPDLIMLDAYETVEAWMANNKLNPRK
LIPAMMRYASEPHAKNETHEVIKYLEYCVHHLHNEDPGVHNLLLSLYAKQEDDSALLRFL
QCKFGKGRISGPECFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDLDLAM
AEADKVEEDEDLRKKLWLMIAKHVIEEEKGVKRENIRKAIAFLKETNGLLKIEDILPFFP
DFTLIDDFKEAICSSLEDYNKQIQKLKEDMHDATHGADNIRNDISALAQRYAVIDRDEEC
GGCKRKILTSGGTNLMARGYTPGGPMAPFYVFPCGHAFHAQCLIAHVTRCTSQTHAEYIL
DLQKQLNLLGVNAVKDKSAGPSEDSITSMTPADKLRSQFDDAIASECPFCGDLMIREISL
PFILPEEAQELASWEIKPHVTSQKILPMTI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaccccacatcggcccgcgccttctccgtcgacctcctggtcggccacgcctccaaa
ggccacggcgtcattacctccatggccgccggcaacgacgtcatagtcctcggcacctct
aagggcttcctcatccgctacgatttcaacatggccgactccttcgatcttgatttgtcc
ggtggccgaggcggtgatcagcaagtgcatagggtttttcttgatcctggggggagtcat
tgtattgttactgtggttgggagtgggggtgctgagagttactatacgcatgctaaatgg
gctaagccgaggattttgacgaggttgaaggggttagttgtcaatgctgttgcttggaat
cggcagcagatcactgaagcttcaactcgggaagtcatccttggtacggagaatggagaa
atatacgagatggcagttgatgaggcagataagaaggaaaagtatgttaagttgctgttt
gagctaacagagctcccagaagctattatgggcttgcagatggaaactgctgctgtaatt
agttctactaggtattatgtgatggcggtcacaccaacaagattatactccttcacaggc
attggttcattggagacggtgtttgctagttattcagatcgtgcagtacatttcatggag
cttcctggagaaataccaaatagtgaactacatttttttattcatcaaagaagggccaaa
tattttgcctggttgtctggtgctgggatatatcacggtgatctaaattttggagcacaa
catagttcaaccagtggggatgagaattttgttgaaaacaagggcctcctggactactcc
aagttgggtgattgcgttaaaccaagatctctcgcagtctccgagtttcattatctgctt
ctaatgggaaacaaggttaaggttctcaacagaattagtcaacaaattgtagaggagctc
aaatttaatcatgcatcagactctgtttcaaatggtataattggactgtgcagtgatgcc
actgctggagtttttttcgcatatgatgaaagttctatcttccaggtttctgtgcatgat
gaaggccgtgacatgtggcaagtgtatttagacatgaaggaatatgctgctgctttagcc
cattgccgcaatccgttccagagagaccaagtgtatttagtacaagctgatgctgctttt
tgtgcaaaggacttttacagggcagcttccttctatgcgaagataaactataccctgtcc
ttcgaggagatcagcttaaagtttattgccataggtgagcaggatgctcttaggacgttc
ttattaagaaagcttgataatcttacaagagatgataagtgccaaattacaatgatctct
acatggactactgagctgtatttggacaagatcaatcgtctattgctggaagatgacaca
gccacagttaataatgtctcattcgcaagcagtgattcggattaccaatcaattatcatg
gaatttcgggccttccttagtgattccaaggatgtattggacgaggcaacgacaatgagg
ttattagagagttatggcagagttgatgaactcgtattctttgccagtcttaaggagcat
tacgaaattgttattcatcattatatccagcaaggagaaacaaagaaggcgttagaggtc
ctccagaagcctaatgtctgcattgatcttcagtataaatttgctccggatctgatcatg
cttgatgcttatgagactgttgaagcatggatggctaacaacaagctgaatccaagaaaa
ctaataccagcaatgatgcgctacgctagcgaaccacatgcaaagaatgagacccatgag
gttatcaagtatttggaatactgcgtccatcatttgcataatgaagatcctggagtgcac
aacctgttgctttccttgtatgcaaagcaggaggatgatagtgcgctcttgcggtttcta
caatgcaaatttggcaagggtcgaataagtggccctgaatgtttttatgatcccaagtat
gcattacgattatgcctgaaggaaaaacgaatgcgtgcttgtgtccatatttatagtatg
atgtctatgcatgaagaagctgttgctcttgcattgcaggtggatcttgatcttgcgatg
gcagaagcagataaagttgaagaggatgaagatttaaggaaaaaactgtggcttatgatc
gcaaaacacgtaattgaggaagagaaaggagttaaaagggagaatataaggaaagcaata
gcatttctgaaggaaactaatggcctactgaagatagaggatattttgccattcttccca
gatttcacacttattgatgactttaaagaagcaatatgctcatcattggaggattacaac
aagcagattcagaaactgaaagaggatatgcatgatgccacacatggggctgataatata
aggaatgatatcagtgctcttgctcaaagatatgctgttattgatcgtgatgaagaatgc
gggggttgtaagcggaaaatattaacttctggagggacaaatctgatggcaagaggttat
acaccaggtggaccaatggctccgttctatgtctttccttgtggacatgcattccatgca
caatgtctgattgctcatgttactcgctgcacaagccaaacacatgccgaatatatactg
gacctccaaaaacaactaaatttacttggggtaaacgccgtgaaggacaaaagtgctggc
cctagtgaggattccatcacgagcatgactccagctgataagttgcgatcgcaatttgat
gatgctatagcaagtgaatgcccgttctgtggagacttgatgatccgagagatctcgctg
ccatttatcctgccagaagaagctcaagagttggcatcatgggagattaagccacatgtt
accagccagaaaattcttccaatgacgatatga
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