Asparagus officinalis (garden asparagus): 109851540
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Entry
109851540 CDS
T05243
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109851540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109851540
03009 Ribosome biogenesis [BR:
aof03009
]
109851540
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109851540
Spliceosome [BR:
aof03041
]
Complex A
U2 snRNP components
U2 related factors
109851540
Complex B
109851540
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109851540
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
90S particles
Helicases
109851540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
SRP54
nSTAND3
T2SSE
AAA_30
Flavi_DEAD
AAA_7
TrwB_AAD_bind
AAA_24
TsaE
Motif
Other DBs
NCBI-GeneID:
109851540
NCBI-ProteinID:
XP_020277314
LinkDB
All DBs
Position
8:complement(123712418..123720891)
Genome browser
AA seq
725 aa
AA seq
DB search
MSTERKRKVSLFDVVDETSVSAKIAKTNGSNFSGKVSYPASINRWSGRPYSARYFEILEK
RRTLPVWQQKEEFLQVVRKNQTLVLVGETGSGKTTQIPQFVLELEDLGKRPMVACTQPRR
VATMSGSHRVAEEMDVTIGEEVGYSIRFEDCSSNKTILKYLTDGMLLREAMADPLLERYK
VIILDEAHERTLATDVLFGLLKEVLRNRPDMKLIVMSATLEAEKFQGYFNGAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACKKITKEINNL
GDQVGPVKVVPLYSTLPPAMQQKIFDSAPLPLKEGGPPGRKIVASTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TKLGEIMSEFPLDPQMAKMLVVSPDFNCSNEILSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPNWCYENFINQRTMKAADNVRGQLVRIMARFNLKL
CSTDFNSRDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKREREKGESK
SRSRA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagagcgcaagcgaaaggtaagcctcttcgacgtcgtcgacgagacctcggtc
tccgccaagatcgccaaaaccaacggctccaatttctccggcaaggtctcgtacccggca
tcgataaaccgatggagcggccgcccgtactccgctcggtacttcgagatcctcgagaag
aggaggacgctgccggtttggcagcagaaagaggagttcttgcaggttgtcaggaagaat
cagacccttgttcttgttggtgagactggtagtggaaagaccacgcagattccccaattt
gttttggaattagaggacttaggtaaacgtccaatggttgcttgtactcagccaaggaga
gtcgctacaatgtcgggttctcatcgtgtagctgaggagatggatgtcacaataggggaa
gaagtcgggtatagcatccgttttgaggattgcagtagcaacaaaacaattctcaagtac
ctaactgatggtatgctcttaagagaggctatggctgacccacttcttgagagatacaag
gttataatacttgatgaagctcacgagcgaaccttagcaacagatgtcctgtttgggctt
ctgaaagaggttttgagaaataggcctgatatgaagttaattgtgatgagtgctaccctt
gaggctgagaaatttcagggatacttcaatggggcaccattgatgaaggtgcctggaagg
ctgcaccctgtggaaattttctatacccaagatccagagagagattacttggaagctgcc
atccggacagttgtacaaatacacatgtgtgagcctccaggtgatatacttgtttttctt
actggtgaggaagagatagaagatgcatgcaagaagatcacgaaggaaatcaataatttg
ggagatcaagttggtcccgtaaaagtagttccgttgtactctacattgcctccagcaatg
cagcagaaaatttttgactctgcccctcttccattaaaagagggtggccctcctgggaga
aagattgtggcttcaaccaatattgcagaaacttcacttacaattgatggaatagtatat
gttattgatcccgggttctctaagcaaaaggtttataacccaaggattcgtgtggaatct
ttactggtgtctcctatatcaaaggcaagtgcgcaccagaggtcaggtcgtgctggtaga
acacaacctggaaaatgctttagactttacacagagaggagtttcaataatgatctgcaa
ccacagacatatcctgagattcttcggtctaatttggcaaatactgttcttacattgaag
aaacttggcatcgatgatcttgtccattttgacttcatggatcctccagcacctgagact
ttgatgcgtgctttggaggtcttgaactacctgggggcactggatgatgaaggaaacttg
accaagttgggtgagattatgagtgagtttcctctcgacccgcagatggcaaaaatgctc
gttgtcagtccggatttcaattgctccaatgagatcctttccatatctgcaatgctctca
gtacccaattgctttctcaggcctagggaagctcagaaagctgcagacgaagctaaagct
cgatttggccacattgatggggatcacctcacacttctcaacgtctaccatgcgtacaag
caaaacaatgaagatcctaattggtgttatgagaatttcatcaaccaaaggacaatgaag
gccgctgataatgtgagaggacaactagtcaggatcatggccagattcaacctcaagcta
tgcagcacagacttcaatagtcgagactattatatcaacatcagaaaggctatgttgtca
ggatacttcatgcaggtagctcatcttgaaagaaccggacactacttgacagtaaaagat
aaccaggtggttcatctccatccttcaaactgccttgatcataagcctgagtgggtcatc
tacaatgaatacgtgttgacaagcagaaacttcattcgcacggtgacagacatccgtgga
gagtggttgattgacattgccccacactactatgatctgagcaatttcccatcatgcgaa
gcaaagagagtcctcgaaaggctttacaataaacgagagagggagaagggcgaaagcaag
agcaggagccgggcatag
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integrated database retrieval system
