Asparagus officinalis (garden asparagus): CCL56_pgp079
Help
Entry
CCL56_pgp079 CDS
T05243
Symbol
rpoB
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCL56_pgp079 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
CCL56_pgp079 (rpoB)
03400 DNA repair and recombination proteins [BR:
aof03400
]
CCL56_pgp079 (rpoB)
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCL56_pgp079 (rpoB)
Transcription machinery [BR:
aof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCL56_pgp079 (rpoB)
DNA repair and recombination proteins [BR:
aof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCL56_pgp079 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
YP_009370013
UniProt:
H2F6Q6
LinkDB
All DBs
Position
CP:
Genome browser
AA seq
1070 aa
AA seq
DB search
MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEEFHKFPKIEDRDQEMEFQLFVERYQLV
EPLIEERDAVYESLTYSSELYVPAGLIWKTGRDMQQQTVFIGNIPLMNSLGTFIVNGIYR
IVINQILQSPGIYYRSELDHNGTSVYTSTIISDWGGRLELEIDRRTRIWARVSRKQKISI
LVLSSAMGLNLREILDNVCYPEIFLSFSNDKEKKKIESKENAILEFYQQFACIGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPPNNTFLLPRDLLAAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENAIRGTICGAIRHKLIPTPQNLVTSTS
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHVKIGHWGSIESPFYEISERSKEARMIYLSPNRDEYYMVA
AGNSLALNRGIQEEQAVPARYRQEFLTIAWEQIHFRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSGVSVIAEREGKIIYTDTHKIIFSSD
GDTISIPLVMYQRSNKNTCMHQKPQVRQGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITKEIPHLEAHLLRNL
DRTGIVMLGSWIEAGDILVGKLTPQAANESSYAPEDRLLRAILGIQVSTAKETSLKLPIG
GRGRVIDVRWIQKKGGSSYNPERIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMP
YLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRVAPFDERYEQEASRKLV
FSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQELL
GATIIGGIVPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctccggaatggaaatgagggaatgtccacaatacctggatttagtcagatacaattt
gaggggttttgtaggttcattaatcagggcttggcagaagaatttcataagtttccaaaa
attgaagatagagatcaagaaatggaatttcaattatttgtggaaagatatcaattggta
gagcccctgatagaggaaagagatgctgtgtatgaatcactcacatattcttctgaatta
tatgtccctgcaggattaatttggaaaaccggtagagatatgcaacaacaaaccgttttt
attggaaacattcctctaatgaattccctgggaacctttatagtaaatggaatatacaga
attgtgatcaatcaaatattgcaaagtcccggtatttactatcgttcggaattggaccat
aacggaacttctgtctataccagtactataatatcagattggggaggaagattggaatta
gaaattgatagaagaacaaggatatgggcacgtgtaagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggtttgaatctaagagaaattttagataatgtttgttac
cctgaaattttcttgtctttctcgaatgataaggagaaaaaaaagattgaatcaaaagaa
aatgctattttggagttttatcaacaatttgcttgtataggtggggatccggtattttct
gagtccttatgtaaggaattacaaaagaaattttttcaacaaagatgcgaattgggaagg
attggtcgacgaaatatgaaccggagactgaatcttgatatacctccgaacaatacattt
ttgttaccacgagatctcttggctgctgcggatcatttgatcggaatgaaatttggaatg
ggtacacttgacgatatgaatcacttgaaaaataaacgtattcgttctgtagcagatctg
ttacaagatcaattcggattggctcttgttcgtttagaaaatgcgattcgaggaactata
tgtggagcaatcaggcataaattgataccgactcctcaaaatttggtaacttcaacctca
ttaacaactacttatgaatccttttttggcctacaccctttatctcaagttttggatcga
actaatccattgacacaaatagttcatgggcgaaaattgagttatttgggtcctggagga
ttgacggggcgaactgctagttttcggatacgagatatccacccgagccactatggacgt
atttgtccaattgacacgtctgaaggaatcaatgttggacttattggatccttagctatt
catgtgaagattggtcattggggatccatagagagtccattttatgaaatatctgagaga
tcaaaagaggcacggatgatttatttatcaccaaatagagatgaatattatatggtagca
gcaggaaattctttggccttgaatcggggtattcaagaggaacaggcagttccggctcga
taccgtcaagaattcttgactattgcatgggaacagattcattttagaagcatttttcct
ttccaatatttttctattggagcttccctcatcccttttatcgagcataatgatgcgaat
cgggctttaatgagttctaatatgcagcgccaagcagttcctctttctcggtccgagaag
tgcattgttggaactgggctggaacgccaaacggctctcgattcgggggtttccgttata
gccgaacgcgaaggaaagatcatttatactgatactcataagatcattttctcaagtgat
ggggacactataagcattccattagttatgtatcaacgttccaacaaaaatacttgtatg
catcaaaaaccgcaggttcggcaggggaaatgcattaaaaagggacaaattttagcggat
ggtgcggctacagttggtggggaactcgctttaggaaaaaacgtattagtagcttatatg
ccatgggaaggttacaattctgaagacgcagtactaattagcgaacgtctggtatatgaa
gatatttatacttcttttcacatacggaaatatgaaattcagactcatgtgacaagtcaa
ggtcccgaaagaatcactaaggaaataccgcatttagaggctcatttactccgaaattta
gacagaaccggaattgtgatgcttggatcttggatagaagctggtgatattttagtaggt
aaattaacgcctcaggcagcaaacgaatcctcgtatgcccccgaggatagattattacga
gccatacttggcattcaggtatccactgcaaaagaaacttctctaaaactacccataggt
ggaaggggccgagttattgatgtgcgatggatccagaaaaaggggggttccagttataat
ccagaaaggattcgtgtatatatttcacagaaacgtgaaatcaaagtgggtgataaagta
gctggaagacatggtaataaaggtataatttcgaaaattttgtctagacaagatatgccc
tacttgcaagatggaacacctgttgatatggtcttcaacccattaggagtaccctcacga
atgaatgtgggacagatatttgaatgttcgctcgggttagcgggggatctgctaaagaga
cattatagggtagcaccttttgatgagagatatgagcaagaagcttcgagaaaactggtg
ttttctgaattatatgaagccagtaagcaaacaaaaaatccatgggtatttgaacccgag
tatccgggaaaaagcagaatatttgatggacgaacaggagatccttttgaacaacctgtt
ctaataggcaagtcctatatcctaaaattaattcatcaagttgatgataaaattcatgga
cgttcgagtggacattacgcacttgttacacaacaaccccttaggggaagggccaagcag
gggggacaacgagtaggagaaatggaagtttgggctctagagggatttggtgttgctcat
attttacaagagatgcttacttataaatctgatcatattagagctcgtcaagaattactt
ggtgctacgatcattggaggaatagtacctaaccctgaggatgctccagaatcttttcga
ctgctcgttcgagaactacgatctttggctctagaactgaatcatttccttgtatctgag
aagaactttcagattaataggaaggaagtttga
DBGET
integrated database retrieval system
