Antiquaquibacter oligotrophicus: LH407_02090
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Entry
LH407_02090 CDS
T09620
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LH407_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_02090
Enzymes [BR:
aog01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LH407_02090
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LH407_02090
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LH407_02090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Zn_ribbon_TFIIB
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
UDF13665
LinkDB
All DBs
Position
420035..420895
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVHALEVDLRRKLADRIVARLDVVDFSALKTFDPPVSVLEGLPVLSVERHGKFLD
FGIGNYHLVVHLARAGWVRWKDSVTPERPRPGRGPLSARLLLDDGSALEFTEAGTKKSLQ
LHIVRDPADVAGVARLGPDPLDPAFTVDVLQGILNGQGRAQIKGVLRNQSLVAGIGNAYS
DEILHRARMSPFTPATMPPERVAALYDALTSTLREAVERADGVPASELKGEKKSNLRVHG
RTGEACAVCGDTIRQVIYSDSTFQYCPTCQTGGVPLADRVLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaactgccggaggttcacgctctcgaggtcgacctacgtcgcaaactcgcggac
cgtatcgttgcacgcctggacgtcgtcgatttttctgcgctcaagacgttcgacccacct
gtttcagtccttgagggtttgcccgtgctgagcgttgagcgacacggaaagtttctggac
ttcggcatcggcaactaccacctcgttgtccacctcgcccgtgccggctgggtgcgctgg
aaggattcggttacccccgagaggcctcgtcccggccgcgggccgctgtcggcgcgcctg
ctgctggacgacggcagcgcgctcgagttcaccgaggccggcacaaaaaagagccttcag
ttgcacattgttcgggaccccgcggatgttgcgggtgtggctcggctcgggccggacccg
ctcgaccccgcattcacggtggacgtgctgcagggcatcctgaacggacaggggcgagcg
cagatcaagggtgtcctgcgcaatcagtccctcgtcgcggggatcggtaacgcctactcc
gacgagatcctgcaccgcgcgcggatgtcgccgttcaccccagcgaccatgccgccggag
cgtgtcgctgcgctctacgacgcgctcacgtccaccctgcgcgaggcggtcgagcgagcc
gacggggtgccggcgagcgaactcaaaggggaaaagaagtcgaacctgcgtgtccacggg
cggaccggtgaggcatgtgccgtgtgtggagacacgatccgccaggtgatctacagcgat
tcgaccttccagtactgcccgacgtgtcagacgggcggagtgccgcttgccgatcgagtg
ctctcgaggttgctgaagtga
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