Antiquaquibacter oligotrophicus: LH407_02975
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Entry
LH407_02975 CDS
T09620
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03420
Nucleotide excision repair
aog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH407_02975
03430 Mismatch repair
LH407_02975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_02975
Enzymes [BR:
aog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH407_02975
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH407_02975
MMR (mismatch excision repair)
Other MMR factors
LH407_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Viral_helicase1
AAA_30
EACC1
CorC_HlyC
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UDF13834
LinkDB
All DBs
Position
complement(594975..598130)
Genome browser
AA seq
1051 aa
AA seq
DB search
MTEHGVRFTADDIADALGRPRPTPQQRSVIESPLGPALVVAGAGSGKTETMAGRVLWLLA
NGIVAPGEILGLTFTRKAAGELAQRIRERIGDLAAAGMLGDDYDPFDAPSVATYNSYANA
LYRDNAAVLGREADGAVLGEAAAWQLARSTVIRSTDARLAGLGKNLDPITRAVLSIARAL
AENVADPEAVRAFALRMRSLADLPPGGRGEYPEVARIAENVGSLDVLVDLAAEYEAAKSA
RGLVEYSDQVALALRILELRPSVADVERERYKVVLLDEYQDTSVVQTRLLAALYGGHPVM
AVGDPNQSIYGWRGASASNLDDFARAFGAEGSRYALSTSWRNGTRILEAANQIVAPFAQG
RAVVERLEASPTASSLPVEVRMLESVVDEAEAVASWLAPKLRSSTPPSAAILLRTRKSQG
FFLEALRRHDIPFHVLGIGGLLAEPEVADLVSALTVVHDPSAGLELIRLLAGARWRIGVR
DLWALRRLASWLRDRDYAHQRYDEVVAEALAASIAPGEGGSIVDALDFVGTAKPGHGALS
EFSDEGLERMRDAADLLARLRSCAGLDLPEFVAVVLQELRLDIEIAANEFRPLGSATIDA
FFDAVGSYVALEDVATLGGFLSWLREAEQREDLSPRPEDPEPGTVQVLTIHGSKGLEWDV
VAVPRLVEDELPGRPAEGGYQGWLAFGQLPWPFRGDAAELPEFEWEAATTRVELRDAQND
FKARVKEHLLREERRLAYVAVTRARHALLLTGSFWATQSAPRKPSTYLRELAQADLIDAI
PDTSELEANPLGDDLERITWPRDPLGSRRPAVEAAARAVREAEPALSGPWASDVQLLIAE
RRERLEGDSRVDVPVRVPASRFKDYVDDPASVASALRRPMPERPFRATQLGTLFHSWVEN
RYGVGGDAAELDADVTELDIDDVADLDLDRLRAIFEASPWASRRPVDVEREIHLPFAGRI
VICKIDAVYALDDDRFEIVDWKTGKAPKTAAELDEKQLQLALYRLAYAKWKGIDPDRIDA
VFYYVAEDRVIRPDRLDDEAALLTRWRAVVA
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagcatggtgtgcgattcacggcggatgacatcgccgacgctctcggcaggccg
agacccactccgcagcagcgttccgtcatcgagtcgccactcggtccagcgctcgttgtg
gcaggcgccggatcgggtaaaacggagacgatggcgggccgggttctctggttgctcgcc
aacggcattgtggcgccgggtgagatccttggcctcacgttcacccgcaaggccgctggc
gagctcgcgcagcgcatccgcgagcgcatcggtgacctcgcggcggcggggatgctcggc
gacgactacgacccgtttgatgcgccgtccgtcgcaacctacaactcctacgcgaacgcg
ctgtatcgggataacgcggccgtcctcggacgtgaggccgacggtgccgtcctgggtgag
gcggccgcatggcaactcgcgcggtcgaccgtgattcgcagcactgacgcacgcctcgcg
gggctcggcaagaacctcgatccgatcacgcgcgcggtgttgtcgatcgcacgggcgctc
gccgagaacgtcgccgacccggaggcggtgcgggcgtttgcgctccgcatgcgtagcctc
gccgacttgccgcccggtggtcgcggtgagtaccccgaggtggcgcgcatcgccgagaac
gtcggctccctcgacgtgttggtcgacctcgccgccgagtacgaggccgccaaaagcgcc
cgcgggctcgtggagtactccgatcaggtcgccctggccctgcgcatcctcgagttgcgt
ccgtctgtcgccgacgtggagcgggagcgctacaaggttgtgctgctcgacgagtaccag
gacacgtcggttgtgcagacccgactgttggcggcactgtatggcgggcatccggttatg
gccgttggtgaccccaaccagtcgatctacggctggcgcggcgcgagcgcatcgaacctc
gacgactttgcgagggcgttcggcgcggaagggtcgcgctacgcgctatcgacgagttgg
cgcaacggcactcgcattctcgaggcggcgaaccagatcgtcgctcccttcgcccagggt
cgtgctgtggtcgagcgcctcgaggcgagtccgacggcgagttcgctgcccgtcgaggtg
cgcatgctcgaatcggttgtcgacgaggcggaggccgtcgcgtcgtggctcgcgcccaag
ctccgctcgtcgactccgccgtcggcggcgatccttttgcgtacgcgcaagtcgcagggg
ttctttctcgaagcgcttcgccgccacgacatcccgttccacgttctcggtatcggtggg
ctgcttgccgaacccgaggtcgccgacctcgtgagtgcattgaccgtggtgcacgatccc
tccgcggggctcgagttgatccgactgcttgccggtgcgcgctggcggatcggagtgaga
gacctgtgggcgctgcggcgtctcgcgtcgtggctgcgagaccgtgactacgctcaccag
cgctacgacgaagtggtggcggaggctcttgccgcctcgatcgcgccgggcgagggcggc
tcgatcgtggacgcgctcgacttcgtcggcaccgcgaagcccggtcacggggcgctctcc
gagttcagcgacgagggactcgagaggatgcgcgacgccgccgacctcctcgcgcgccta
cgctcgtgcgccgggctcgacctaccggagttcgttgcggttgtgctccaagagctgcgc
ctcgacatcgagatcgccgcgaatgagttccggccgctcgggtcggccacgatcgacgcc
ttcttcgacgccgtcggaagctacgtcgcgctggaagacgtcgcgaccctcggcggcttc
ctctcctggctgcgcgaagcggagcagcgtgaggatctgtccccgcgccccgaagatccg
gagcccggcacggtgcaggtgctcaccatccacggctcgaagggtctcgagtgggatgtc
gtcgccgtcccgcgcctcgtcgaggacgagctgcccggaaggccagccgagggtggctac
cagggctggctcgcgttcggtcaacttccgtggccgttccgaggtgacgcggccgaactg
cccgagttcgagtgggaggcggcgacaacccgtgtcgaactccgcgacgcccagaacgat
ttcaaggcgcgcgtcaaggaacacctgctgcgcgaggagcggcgtttggcctacgtcgcg
gtcacgcgcgcgcgacatgccctcctcctgacggggtcgttctgggccacccagtcggca
ccccgtaaacccagcacgtatttgcgcgaactcgcccaggcggacctgatcgacgcgatt
cctgacacgagcgagctcgaggccaacccgcttggcgacgacctcgaacggatcacgtgg
ccgcgcgacccgctcggctcacgacggcccgcggtggaggccgccgcgcgagccgtgcgc
gaggcagagccggcgctgtccggcccctgggcgtcagacgtgcaactcctcattgcggag
cgacgcgaacgtctcgagggggactcgcgtgtcgatgtgccagtacgcgtgccggcgtcg
agattcaaggactacgtggatgacccggcatccgtcgcttcggcgctcaggcgacccatg
cccgagcgtcccttccgtgcgacgcaactgggcaccctctttcactcgtgggtcgagaac
cgttacggcgtcggtggtgatgctgccgagctggatgccgacgtcaccgaactcgacatc
gacgacgtcgctgacctcgatctggatcgccttcgcgcgatcttcgaggcgagcccgtgg
gcctctcgtcgccctgtcgacgtggaacgagagatccaccttcccttcgccgggcgcatc
gtcatctgcaagatcgacgccgtgtacgcgctcgacgacgatcgattcgaaatcgtggac
tggaagaccggaaaggcgccgaagaccgcagccgaactcgacgagaaacaactgcagctg
gccctctaccgtctcgcctacgcgaagtggaagggaatcgacccggatcggatcgacgcg
gtgttctactacgtggccgaggatcgtgtcatccgtcccgaccgtctcgacgacgaggct
gccctcctcacccggtggcgtgcggtagtcgcgtga
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