Antiquaquibacter oligotrophicus: LH407_05700
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Entry
LH407_05700 CDS
T09620
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LH407_05700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aog03021
]
LH407_05700
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_05700
Enzymes [BR:
aog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LH407_05700
Transcription machinery [BR:
aog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LH407_05700
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LH407_05700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
DUF1690
Motif
Other DBs
NCBI-ProteinID:
UDF14355
LinkDB
All DBs
Position
complement(1144635..1148516)
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVHAFDEIKIGLATADDIRKWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIISVDEQGRHDDLPGLENEIRLEIKTLEGQRDTRIAERLSKLEED
LAALEAEGAKADQKRRTKDGAEKEMSQTRKAFDEQIAQLERVWEDFRNLKVGDLKPEDSV
FQELQDRFGMYFEAHMGAEAIQKRLQDFDLTAESEKLHDEIATGKGQKKIRAIKRLRVVN
SFLQTGNSPAAMVLEVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFASIAEAILAHDQHTLDLNATVRIRLDGLHFAEGTAPEGFVQGKTFLLTTTLGRALFNE
ALPEDYPYVEAVADKGQISAIVNDLAERYPKVEVAAALDRIKDAGFHWATRSGVTVALSD
IVTPPSKPEIIAKYEKQAASVQAQYDKGLTTDAERRQELIEIWNKATAEVATAMQDNFAT
NNNINRMVSSGARGNWMQVRQIAGMRGLVSNPKGEIIPRPIVHSYKEGLTVAEYFISTHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLDMPIAEQGADGTWALAAN
VENSVYARSLAADAVNDKGEVIAPAGSDVGDVLLDTLLAAGVHNIKVRSVLTCESAVGVC
AACYGRSLATGLLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVTE
LFEARTPKSASPIAEAAGRISIEDGDRTRKIILTPDNGDEPIAYPVLRRATLLVEDGQHV
ELGQQFHVGNLDPKEVLRVKGVRAVQQHLVDGVQGVYRSQGVPIHDKHIEVIVRQMLRKV
TVVDHGDTDLLPGELVDRQKYNEINRASLTEGKKTASARQEVMGITKASLATESWLSAAS
FQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLARYRDVSVEATEEARAERYPN
RIFADDLGVSEADLSFVDFDSFSSDDFTPGTYN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgttcacgcgtttgacgagatcaagatcggcctggctacagcggacgacatc
cgtaagtggtcgcacggcgaggtcaagaagcctgaaaccatcaactaccgcacgctcaag
ccggagaaggacggtctcttcggagagcagatcttcggcccgtcccgcgactgggagtgc
tcgtgcggtaagtacaagcgagtccgcttcaagggcatcgtgtgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtccgccgcgagcgcatgggccacatcgagctcgctgccccc
gttacccacatctggtacttcaagggtgttccgagccgtctcggttacctcctcgacatg
gcaccgaaggacctcgagaaggtcatctacttcgctgcctacatgatcatttcggtggac
gagcagggtcgtcacgacgacctgcccggcctcgagaacgagatccgtctcgagatcaag
acgctcgagggccagcgcgacacccgtatcgcggagcgcctctccaagctcgaagaggac
ctcgcggccctggaggcggagggtgccaaggccgaccagaagcgtcgcaccaaggacggc
gccgagaaggagatgagccagacccgcaaggccttcgacgagcagatcgctcagctcgag
cgcgtgtgggaggacttccgcaacctcaaggtcggcgacctgaagcccgaggactcggtc
ttccaggagctgcaggaccgcttcggcatgtacttcgaggcccacatgggcgccgaggcc
atccagaagcgcctgcaggacttcgacctgaccgccgagagcgagaagcttcacgacgag
atcgctaccggtaagggtcagaagaagatccgcgccatcaagcgcctccgtgtggtcaac
tcgttcctccagaccggcaactcgccggccgccatggtgctcgaggtcgtcccggtcatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgcctccgccgcctgctcgacctc
ggtgcacccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgttgacgcc
ctgttcgacaacggtcgtcgtggtcgccccgtcaccggtaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggaaag
cgcgtcgactactccggccgttcggtcatcatcgtcggcccgcagctcaagcttcaccag
tgtggtctgcccaagcagatggcactcgagctgttcaagccgtttgtgatcaagcgcctc
atcgacctcagccacgctcagaacatcaagagcgccaagcgtatggtcgagcgttcgcgc
ccgcaggtgtgggatgtgctcgaggagatcatccgtgagcgccccgtgctgctcaaccgc
gcacctaccctgcaccgcctcggcatccaggccttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgcggcgttcaacgctgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggtcgaggctcaggccgaggcccgcgtgctcatgctc
gcgtcgaacaacatcctgaagccgtcggacggtcgccccgtgaccctgccgacgcaggac
atgatcatcggtctgcaccacctgaccacggtcaaggagggtgcgacgggtgagggccgt
gcgttcgcgtcgatcgccgaggcgatccttgcgcacgaccagcacacgctcgacctcaac
gcgaccgtgcgcatccgtctcgacggcctgcacttcgccgagggcaccgctcccgagggc
ttcgtgcagggcaagacgttcctgctcacgaccaccctcggtcgcgcgctcttcaacgag
gctcttcccgaggactacccctacgtggaggccgtggccgacaagggtcagatctcggcg
atcgtcaacgatctcgccgagcgctacccgaaggtggaggtcgcagcagcactcgaccgc
atcaaggacgcaggtttccactgggcaacccgctcgggtgtgaccgtcgcgctctccgac
atcgtgacccctccgtcgaagccggagatcatcgcgaagtacgagaagcaggccgcaagt
gtccaggcccagtacgacaagggtctgaccaccgacgccgagcgtcgtcaggagctcatc
gagatctggaacaaggcaaccgccgaggtcgccaccgcgatgcaggacaacttcgccacc
aacaacaacatcaaccgcatggtgtcgtccggtgcacgtggtaactggatgcaggtgcgc
cagatcgccggtatgcgtggtctcgtgtcgaacccgaagggtgagatcatcccccgcccg
atcgtgcactcctacaaggagggcctcaccgtggccgagtacttcatctcgacccacggt
gcacgtaagggtctcgccgacaccgcactccgtaccgccgactcgggttacctcacgcgt
cgtctcgtcgatgtctcgcaggacgtcatcatccgtgaggacgactgcggcacctcgaag
ggtctcgacatgccgatcgccgagcagggtgccgacggcacctgggctctcgcggcaaac
gtcgagaactcggtctacgcgcgtagcctcgctgccgacgccgtgaacgacaagggggag
gtcatcgctcctgccgggtccgacgtgggcgacgtgctcctcgacacgctccttgccgcc
ggtgtgcacaacatcaaggtgcgctcggtgctcacgtgtgagtccgctgtcggtgtgtgt
gccgcgtgctacggccgttcgctcgcgaccggtctgctcgtcgacatcggtgaggccgtc
ggtatcatcgccgctcagtccatcggtgagccgggaacccagctcacgatgcgtaccttc
cacaccggtggtgtggcatcggcggatgacatcacccagggtctgccccgtgtgaccgag
ctcttcgaggctcgcaccccgaagtcggcttccccgatcgcggaggcggctggccgcatc
tcaatcgaggacggcgaccgcacccgcaagatcatcctcacgcccgacaacggcgatgag
ccgatcgcgtacccggtgctgcgccgtgcaaccctcctcgtcgaggacggtcagcacgtc
gagctcggccagcagttccacgtcggaaacctggacccgaaggaagttcttcgcgtcaag
ggtgtccgtgcggtgcagcagcacctcgtggacggtgtgcagggcgtctaccgctcgcag
ggtgtgccgattcacgacaagcacatcgaggtcatcgttcgtcagatgctgcgcaaggtg
accgttgtcgaccacggcgacaccgacctgctccccggtgagctcgtcgaccgccagaag
tacaacgagatcaaccgcgcatcgctgaccgagggcaagaagaccgcgtcggcacgtcag
gaggtcatgggtatcaccaaggcgtcgctggcgaccgagtcgtggctgtcggccgcgtcc
ttccaggagacgacccgcgttctcacgcaggccgccatggagggcaagtccgatccgctc
atgggtctcaaggagaacgtcatcatcggaaagctcatcccggccggtaccggtctggcg
cgctaccgcgacgtctccgtcgaggcgaccgaggaggctcgggccgagcgttacccgaac
cgcatcttcgcggacgacctcggtgtgagcgaggccgacttgagcttcgtcgacttcgac
agcttcagttcggacgacttcacgcccggcacctacaactga
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