Antiquaquibacter oligotrophicus: LH407_06155
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Entry
LH407_06155 CDS
T09620
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aog
Antiquaquibacter oligotrophicus
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aog03032
]
LH407_06155
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_06155
Enzymes [BR:
aog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LH407_06155
DNA replication proteins [BR:
aog03032
]
Prokaryotic type
DNA Topoisomerases
LH407_06155
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LH407_06155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Cas3_I-F_Cas2
Motif
Other DBs
NCBI-ProteinID:
UDF14441
LinkDB
All DBs
Position
1233247..1234203
Genome browser
AA seq
318 aa
AA seq
DB search
MRLTQARPYEAPGVTRIRRGDAFDYRRPDRRKVGAEERARFDALAIPPAWREVWIAPSPS
SHILAVGLDDAGRRQYIYHPAWRAAQDEAKFDRALALAAALPAARRRAARSFGEPALSRD
RVLATAFRILDLTAMRVGNETYATTNGSRGLCTLLVRHVVVGDGGVTFDFVGKSRQRASI
AVTDAPLLLALDELTTHRAAGSRLLAWANGRRRDPIRTSEVNEFIRGTAGDGFTAKDFRT
LHATATAAAALPRRTPEAEREVQRAIREATDAAARMLGNTPTVARASYIHPAVFERFIDG
RTIARPGSMTSLLELLQD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
gtgagactcacccaggccaggccctacgaagcgccgggcgtcacgcgcatccggcgcggg
gacgcgttcgactaccgcagacccgaccggcggaaggtgggcgccgaggagcgtgcgcga
tttgacgccctcgccataccgccagcgtggcgggaggtgtggatcgcgccgagcccgtcg
tctcacatcctcgcggtcggtctcgacgacgccggcaggcgccagtacatctaccaccct
gcatggcgggcggctcaagacgaagcgaagttcgatcgcgcgctcgccctcgcagcggct
ctccccgcggcacgccgtcgtgccgcacgcagcttcggcgaacccgcactctcgcgcgac
cgggtgctcgccaccgccttccgtatcctcgacctcaccgcaatgcgcgtgggcaacgag
acctacgcgactactaacggctcgcgtggcctgtgcacgctcctcgtgcggcatgtggtc
gtcggcgacggcggcgtgaccttcgacttcgtcggcaagagtcggcagcgggcatccatc
gccgtcacggatgcaccccttctccttgcgctggacgagctgaccacccacagggccgct
ggcagtcgactcctcgcgtgggcaaacggacgacgccgcgaccccattcgcacgtccgag
gtcaacgagttcatccggggtacggcaggtgacggcttcaccgcgaaagacttccgcacc
ctccacgccacggccaccgcggcagcagctctcccccgccgcacgccggaggcggagcgc
gaggtgcagcgagcgatccgcgaggcgacggatgccgcggcccggatgctcggcaatacg
ccgaccgttgcccgggcgagctacatccaccccgctgtcttcgaaaggttcatcgacggg
cgcacgatcgcacgccccggaagtatgacctcgctcctggagttgctccaggactga
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