Antiquaquibacter oligotrophicus: LH407_13110
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Entry
LH407_13110 CDS
T09620
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH407_13110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aog03019
]
LH407_13110
03009 Ribosome biogenesis [BR:
aog03009
]
LH407_13110
Enzymes [BR:
aog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LH407_13110
Messenger RNA biogenesis [BR:
aog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH407_13110
Ribosome biogenesis [BR:
aog03009
]
Prokaryotic type
rRNA processing factors
LH407_13110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UDF13082
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All DBs
Position
2673730..2676309
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AA seq
859 aa
AA seq
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MVNDNDSTENRPATAPKRRLGLFGRRAAEASKNDATSAEQDIETTTAPEPDPVPESAVED
ASVDEAPVEETPAAPRRRTRAKSAADHVSASPGVIEEQVAVAEGDTADTSSSDAPAEEPV
RSTTALLFQAPDLPTRPEPAEGEEGGTVRRRSRRRSGESERAGDDAPGTVVRVRQPRPAP
EPITEPQRVKGSTRLEAKKQRRRDGRDAGRRRPVVTESEFLARRESVDRQMIVRSKHGRI
QIAVLEDSVLVEHYVAKAQEASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVD
WDAAAAEGDGKNQARRIELALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNG
SMSGISRKLPDTERSRLKKILKEVLPDNVGVIVRTAAEGATEEQLTLDVNRLTTQWAEIS
RLVETQQAPALLHSEPDLLIKIIRDVFNEDFQKLIIEGEDARQTIESYLRSVAPDLLDRL
SAYDGTDDSFDRFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNL
EETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQ
VAEVTSLGLVQMTRKKLGLGLLETFSEQCDVCAGRGIIVHHDPVTKHRQQTQSPQPEQGG
GRRRGRGGNGGASVPTVKNGVGGVGTHAITEDVRNALARVASVTVHHDENGAPAPDQIDG
QLTTTQAETSVEGGDTGNAPATDAPTDAPKTKRRTPRKSKASAAKSSEKNAGTDAAPAGS
SGEADGQSDIVETVAILDIPVAKRARAPRTTPAPEAQQLLETVLDSLPPASSQPSSSRPR
VSRRAGSAGQVVSAPPAED
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgacaacgattcaactgaaaaccgtccagcaactgcacccaagaggagactc
ggacttttcggacgccgcgcagccgaggcatccaaaaacgacgcgacttccgccgagcag
gacatcgaaaccaccacggcacccgagcccgaccctgtgcccgaatctgcggtcgaggac
gcttcggtcgatgaggctcccgtcgaggagacaccggcggcccctcgccgtcgtacccgt
gccaagagtgcggcagaccacgtgtcggcgagtccgggtgtgatcgaagagcaggtcgcg
gtggccgagggtgataccgccgacacctcctcctcggatgcgccggcggaggagcccgtg
cgctcgacgacggcgctcctcttccaggcccccgatcttcctacccgccccgagcccgcc
gagggcgaggagggcggcaccgtgcgtcgacgttcacgtcgccgcagcggtgagagcgag
cgtgcgggggatgacgctccgggcactgtcgtgcgggtgcgccagccgcgccccgctccg
gagccgatcaccgaaccacagcgtgtcaaggggtccacgaggctcgaagcgaagaagcag
cgccgccgcgacggacgtgacgccggtcgtcgccggcccgtcgtcacggaaagcgagttc
ctcgctcgccgcgagagcgtcgaccgccagatgatcgtgcgttccaagcacggacgtatc
cagatcgccgtgctcgaggactccgtgctcgtcgagcactacgtggccaaggcccaggag
gcgagcctcatcggcaacgtctacctcgggcgtgttcagaacgtgctcccgagcatggag
gcggcgttcgtcgacatcggtcgcgggcgcaacgccgttctctactccggcgaggtcgat
tgggacgccgcagcagcagagggtgacggcaagaaccaggcccgccgaatcgaactggcg
ctcaagcccggtgaccgtgtcctcgtgcaggtcaccaaggatcccgtcggtcacaagggt
gcacgactgacgagccaggtgagcctccccggtcgctacctcgtttatgtacccaacggc
tcgatgtccggtatcagccgcaagctccccgacaccgagcgttcacgtctcaagaagatc
ctcaaagaggttcttcccgacaacgtcggtgtcatcgtgcggaccgcggcggaaggcgca
accgaggagcagctgactctcgacgtaaaccgcctcaccacccagtgggccgagatcagc
cgactcgtggagacccagcaggctcccgcgctgcttcactccgagcccgatctgctcatc
aagatcatccgtgatgtcttcaacgaggacttccagaagctcatcatcgagggcgaggat
gctcggcagacgatcgagagctacctccgctcggttgctcccgacctcctcgaccgcctg
tcggcgtacgacggaaccgacgactcgttcgaccggttccgtgtaaccgagcagatcgag
aaggctctggaccgcaaggtgtggctcccgtcgggaggctcgctcgtgatcgaccgcacc
gaggcgatgacggtggtcgacgtcaacacgggcaagttcgtgggttccggtggaaacctc
gaggagaccgtcaccaaaaacaacctcgaggcggccgaggagatcgtccgtcagcttcgt
ctgcgtgacatcggcggcatcatcgtcgtggacttcatcgacatggttctcgaatcgaat
cgcgacctcgtgctccgccgactcgtggagtgcctcagccgcgaccgcacaaagcaccag
gtcgccgaggtcacgtcgctcggtcttgtccagatgacccgcaagaagctgggtctcggg
ctactcgagacgttcagcgagcagtgcgatgtgtgcgctggccgcggcatcatcgtccac
cacgatccggtgacgaagcaccgtcagcagacgcaatcgccgcagcccgaacagggtggc
ggacggcgtcgcggacgcggcggcaacggcggggcatccgtccccaccgtgaagaacggt
gtcggcggagtgggaacccacgccatcaccgaagacgtccgtaacgccctcgcgcgcgtg
gcatccgtgaccgtgcaccacgacgagaacggcgcaccggcgcctgaccagatcgacggt
cagctcaccacgacgcaggcagagacgagtgtcgagggcggtgacaccggcaacgctccg
gcgacggatgccccgaccgacgctcccaaaacgaagcgccgtacaccccgcaagtcgaag
gcctccgccgcgaagtcctccgagaagaacgccggtaccgacgctgcccctgcagggtcc
tcgggtgaggcggatgggcagtccgacatcgtcgagacggtcgccatcctcgacatcccc
gtggccaagcgcgctcgtgcccctcgcacgacaccggctcccgaggcgcagcagttgctt
gagacggtgttggactcactgccacccgcgtcgtcgcagccgtcgtcatctcgcccgcgc
gtgtctcgccgtgcggggagtgccggacaggttgtgagtgcgcccccagccgaggactga
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