Antiquaquibacter oligotrophicus: LH407_14035
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Entry
LH407_14035 CDS
T09620
Name
(GenBank) type IIA DNA topoisomerase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
aog
Antiquaquibacter oligotrophicus
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aog03032
]
LH407_14035
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_14035
Enzymes [BR:
aog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LH407_14035
DNA replication proteins [BR:
aog03032
]
Prokaryotic type
DNA Topoisomerases
LH407_14035
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LH407_14035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
UDF13259
LinkDB
All DBs
Position
2862508..2864586
Genome browser
AA seq
692 aa
AA seq
DB search
MASNDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFGTRIG
VILHPDGSVEVRDTARGIPVDIEPKTGLTGVEVVFTKLHAGGKFGSGSYAASGGLHGVGA
SVVNALSERLDVEVDRDGKTWAMSFHRGEPGVFADEGAPTPDAPFTPFISGSELRVIGRV
AKGVTGTRVRYWADRQIFTKGASFQTDDLVDRLRQTAFLVPSLALELSDLRGEEPRAESF
HFEGGIAEFVEHLAQDAPITDTWRLTGDGAFTETVPVLQDNGAMVPTELQRECTVDIALR
WGTGYDTVFKSFVNIIATPKGGTHQSGFEQGLLKFLRSEVEKNARRLKAGNDKLEKDDVL
AGLTAVLTVRLPEPQFEGQTKEVLGTPAVRSIVSSVVAKQLAARFGSPKRDDKAQTSLVL
DKIVSEMKSRISARAHKETQRRKNALESSTLPAKLVDCRSHDVANSELFIVEGDSALGTA
KLARDSEYQALLPIRGKILNVQKASVSDMLSNTECASIIQVIGAGSGRSFDLESARYGKV
IIMSDADVDGAHIRTLLLTLFFRYMPDMIRDGRVYAAVPPLHRVVVINPGSKPNETIYTY
SEAELTAVLAGLRKSGKKYQDPIQRYKGLGEMDADQLAITTMDRTHRTLRRVNIGDAEMA
TSVFELLMGNEVAPRKEFIIAGQGLNRDRIDV
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaacgactattccgcacggcatctctcggtgctcgaaggcctcgaagctgtg
cggaagcgtccgggaatgtacatcggttcgacggactcgcgtgggctcatgcactgcctc
tgggagatcatcgataactcggtggacgaggccctcggcggtttcggtacccgcatcggc
gtcatccttcatcccgacgggagtgtcgaggtgcgcgacacggcgcgaggcattcctgtc
gatatcgagcccaagactggcctcaccggagtcgaggtcgtcttcacgaagctgcacgct
ggtggcaagttcggttctggttcgtacgcggcctccggtggactgcacggcgtcggggct
tctgtggtcaacgcactctccgagcgactcgatgttgaggtcgatcgcgacggcaaaacc
tgggcgatgtcgttccatcgcggcgaaccgggtgtgttcgccgacgagggcgctcccacc
ccggacgcgccgtttacgccgttcatctcgggaagtgagctccgtgtgatcggccgcgtg
gccaagggcgtgaccggcacgcgggtgcgctactgggccgaccgtcagatttttaccaag
ggcgcgtcgttccagaccgacgatctggtcgaccgcttgcggcagaccgcttttctggtg
ccatcgctcgcactagaactgagcgacctccgcggcgaggagcctcgcgccgaatcgttc
cacttcgagggcgggatcgcggagttcgttgagcaccttgcccaggatgccccgatcacc
gacacgtggcgtctgacaggcgacggtgccttcactgagaccgtgcccgtgcttcaggac
aacggcgcaatggtgcccacggaactccagcgtgagtgcaccgtcgacatcgctcttcgg
tggggaaccggctacgacaccgttttcaagagttttgtgaacatcatcgcgaccccgaag
ggtggaacccaccagtccggattcgagcagggcctcctgaagttcctcaggtccgaggtg
gagaagaacgcccgtcggctgaaggcgggtaacgacaagctcgagaaagacgatgtgctc
gctgggctgacggcggtactgaccgttcgcctaccggaaccgcagttcgaggggcagacc
aaggaggtgctgggcacgccagctgtgcgttccatcgtctcgagtgttgtggccaagcag
ctggcggcacgatttgggtcgccgaagcgcgacgataaggcgcagacatccctcgtcctc
gacaagatcgtgtcggagatgaagtcgcgcatctcggcgcgcgcacacaaggagactcag
cgtcgcaagaacgcgctcgaaagctcgaccctcccggcgaagcttgtcgattgtcggtca
cacgatgtagcgaatagcgagctttttatcgtcgagggtgattccgcgctcggtacagcc
aaactcgcgcgagacagtgagtaccaggcgttgttgcccatccgaggcaaaatcctcaac
gtgcagaaggcctctgtgtcggacatgctctcgaacaccgaatgcgcgtcgatcattcag
gtgatcggtgcgggatcggggcgcagcttcgacctcgaatcggcccgatacggcaaggtc
atcatcatgagtgatgccgacgtggacggcgcccacatccgcacgcttctgctcaccctc
ttcttccggtatatgccggacatgattcgtgacggacgggtgtacgccgccgtgccgccg
ttgcaccgcgttgtcgtcatcaacccgggctcgaaaccgaacgagacgatctacacctac
tccgaggccgagctgaccgcggttctggcgggcctgcggaagtcaggaaagaaataccag
gaccccatccagcgctataagggtttgggtgagatggatgccgatcagctcgccatcacg
acgatggaccgcactcatcgcacccttcgtcgcgtaaatatcggtgacgcggagatggcc
acctcggtgttcgagttgctcatgggcaacgaagtggctccgcgcaaagagttcatcatc
gcgggtcagggattgaatcgcgaccgtatcgacgtgtga
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