Amycolatopsis keratiniphila: AORI_0639
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Entry
AORI_0639 CDS
T02678
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AORI_0639 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoi03021
]
AORI_0639 (rpoC)
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_0639 (rpoC)
Enzymes [BR:
aoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AORI_0639 (rpoC)
Transcription machinery [BR:
aoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AORI_0639 (rpoC)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AORI_0639 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
AGM03228
UniProt:
R4SXI6
LinkDB
All DBs
Position
660646..664557
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLATEFDVAAEAESLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNENAEGAGN
AYSSPAEAIMAFDRKALSLHAPIKIRVTDRQPAKADEARLAENGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLVPAGKKAILDEYEGKADQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTTRGINMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLISSGISKVKVRSVLTCESA
VGICATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDRVAVGQQLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEAKNRASVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSTPGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagctccgcatcggcctcgccaccgccgacgacatt
cgtcagtggtccttcggcgaggtgaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggtgttccctcccgcctgggctacctgctcgacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgcgacgcggacatcgaggcacgggcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggaaggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgccggtcgcgagctggaccgtctcgag
gaggtctggacgaccttcaccaagctcgacacccgccagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcgccgcggaggccgagagcctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctctaccgccgggtcatcaaccggaacaaccggttgaagcggctgatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactccggtcgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggtcgcgg
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggccacccggtgatgctgaaccgt
gcgccgaccctgcaccgcctcggtatccaggccttcgagccgcagctggtcgaaggcaag
gccatccagctgcacccgctggtctgtgaagcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcggcgaacaacatcctttcgccggcgtcgggccgtccgctcgccatgccgcgtctggac
atggtgaccggtctgttccacctgacccggttgaacgagaacgccgagggcgcgggcaac
gcgtactcgtcgcccgccgaggcgatcatggcgttcgaccgcaaggcgctgagcctgcac
gccccgatcaagatccgcgtcaccgaccgtcagcccgccaaggccgacgaggcgaggctc
gcggagaacggctgggagccgggcaaggcgtggctggccgagaccaccctgggccgcgtg
ctgttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cgtcaggccgcgatcgtgaacgacctcgccgagcgctactcgatgacccaggtcgcgcag
accctggaccgcctgaaggacgccggtttctactgggcgacccgttcgggtgtcacggtc
gccatttccgacgtgctcgtcccggcaggcaagaaggccattctggacgagtacgaaggc
aaggccgaccaggtcgagaagcggtaccagcgtggtcagctgtcgcacgccgagcggaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgcgatgatcgtgaagtcgggcgcggcgggcaacatg
acgcaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgaaggcctgtcggtggcggagtacttcatc
gcgacgcacggtgcccgtaagggtctggcggacacggcgctccgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagatcgactgt
ggcaccacccgcggtatcaacatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgcgaccagcacgtcgagaccagcgtgtacgcgcggaacctggcgaccgacgcggtcgac
gccaagggcaacgtcgtgctcaacgccggtgacgacatcggtgacccggcgatcgacaag
ctcatctcgagcgggatctccaaggtcaaggtgcgttcggtgctgacctgcgagtcggcc
gtcggtatctgcgccacctgctacggccggtccatggcgaccggtcagctcgtcgacgtc
ggtgaggccgtgggtatcgtcgcggcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtggccggtgacgacatcacgaccggtctgccccgt
gtccaggagctgttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctgatcccggacgac
ggcagcgaagagatcgtcttcgacaagctgtccaagcgtcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccgtgtcgcggtcggccagcagctgctcgaaggcacg
ccggacccgcacgaggtcctgcgggtcatggggccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtgacgatcatcgactccggtgccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgaagaaccgcgcgtcggtcgcc
gagggcggcgagccggcctcgggtcgtccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcctcgttccaggagaccacgcgtgtcctgaccgac
gcggccatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtaccgggatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcgcgggtcgccgcttacgcgatcccgtcctacgacgacggctactacaccccg
gacgtgttcggctcgacgccgggcgccgcggtgccgctggacgactacgacttcggccgc
gacttccgctga
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integrated database retrieval system
