Amycolatopsis keratiniphila: AORI_1276
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Entry
AORI_1276 CDS
T02678
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
aoi
Amycolatopsis keratiniphila
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoi03019
]
AORI_1276 (hrpB)
Enzymes [BR:
aoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AORI_1276 (hrpB)
Messenger RNA biogenesis [BR:
aoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AORI_1276 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AGM03865
UniProt:
R4SMC8
LinkDB
All DBs
Position
complement(1307420..1309813)
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AA seq
797 aa
AA seq
DB search
MTLPDLPVRAVLPELEAALDAHGTAVLVAPPGTGKTTLVPLALDNGEGRVIVAEPRRLAA
RAAAARMASLLGERVGETVGYSVRGDRKVSSSTRIEVVTSGLLVRRVQGDPELAGVSAVL
LDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVASGRLAALLGDAPVISAHARTY
PVDVSYSPPSRGERIEATVARVIHKALSEGDGDVLAFLPGAGEIARVSGLLHGLDADVLP
LHGRLSAASQDDALRPRDRRRVVLSTSVAESSLTVPGVRAVVDCGLSRVPRVDHRRGLPG
LATVRVSAAVAEQRAGRAGREAPGRAYRCWAAHEQGALPAYPEPEIRTAELARFALELAC
WSTPDGSGLAWWDPPGEGALAAGRALLTTLGATTEDGTVTERGRKMAGLGLHPRLARALL
DGAARTNARSAAEVVALLDSGGTLTDLEAELRRVRGDERWKRDVRRLSKLVPDGGNASDP
ALVVALAHPERLARRRAAGTPVYLMAGGTAAELPRGSGLADVEWLAVAEATRDPGRAQGV
IRLAAPADEDLAVRAAPNLVSSVDEVHWASGDVVARSVRRLGAIVLSEKPLRSPAPDAIR
AALLDGLRTEGLGLLRWSEDGKRLRERLSFLHRVLGPPWPSVADADLMSTLDSWLDLGTA
RRRSDLASLDAGAALRGLLPWPEASRLDELAPDRLEVPSGSRIRVDYSGEQPVLAVKLQE
TFGWLATPELAGVPVVLHLLSPAGRPAAVTADLESFWCNGYAAVRADLRGRYPKHPWPED
PLTAAPTRRTSRGQSIN
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttcccgatctgccggttcgcgccgtcctgcccgaactcgaagccgccctcgac
gcccacggcaccgctgtcctcgtcgcgccccctggcaccggcaagaccactttggtgccg
ctcgccttggacaacggcgaaggccgggtgatcgtcgccgaaccgcggcggctcgccgcc
cgggccgcggccgcgaggatggcgtccctgctcggcgaacgcgtcggggagacggtcggc
tattccgtccgaggcgatcggaaggtgtcttcttcgacgcggatcgaagtggtcacctcg
ggtttgctggtacggcgggtgcagggcgatcccgagctggccggggtgtcggccgtcctg
ctcgacgaatgccacgaacgccatctcgacgcggatctgctgctcgcgctgctgctggac
gtgcgcgccgggctgcgggacgacctgcggctgctcgcgacgtccgccacggtggcctcc
ggacggctcgcggccctgctcggcgacgcgccggtgatcagcgcgcacgcgaggacctat
ccggtcgacgtctcgtactccccgccctcgcgcggcgagcggatcgaggcgaccgtggcc
cgcgtgatccacaaagcactgtccgaaggggacggtgacgtcctcgccttcctgcccggc
gccggtgagatcgccagggtgagcggacttctccacggcctcgacgccgacgtgctgccc
ttgcacggacggctttcggcggcgagccaggacgacgcgctgcgcccgcgcgaccggcgc
agggtggtgctctcgacgtcggtcgccgagtccagcctgaccgtgccgggggtgcgcgcg
gtggtggactgcgggctttcccgcgttccccgtgtcgatcaccggcgcggcttgccgggg
ctggcgacggtccgcgtttcggccgcggtcgcggaacagcgagccggccgcgccggacgc
gaggcgccgggccgcgcgtaccggtgctgggccgcgcatgagcaaggggcgctgcccgcc
tatcccgaacccgagatccggacggcggaactggcgcggttcgccctcgaactcgcctgc
tggtccactccggacggttccggccttgcctggtgggaccctcccggcgaaggcgcgctg
gcggccggacgcgcgttgctgaccaccctcggggcgaccacggaggacggcacggtcacc
gagcgcgggcggaagatggccgggctgggcctgcatccgcggctggcgagggcgttgctg
gacggcgcggcgcgcaccaacgcgcgttcggccgccgaagtcgtcgcactgctggacagc
ggcggcacgctgaccgacctcgaagccgagttgcgccgagtacgcggcgacgagcgctgg
aagcgtgacgtgcgaaggctttccaagctggtgcccgacggcggcaacgcctccgatccg
gcgctggtggtggcgctcgcgcatcccgagcggctcgcgcggcggcgtgccgcggggacg
ccggtgtacctgatggccgggggaacggcggccgaactcccgcgcggcagcgggctggcc
gacgtcgaatggctggcggtggccgaagcgacccgggatcccggccgcgcgcaaggcgtc
atccgcctggccgcgcccgccgacgaagacctcgccgtccgcgcggcgccgaatctggtg
tcctctgtggacgaagtgcactgggcttccggtgatgtcgtcgcgcgctcggtgcgacgg
ctcggcgcgatcgtgctctcggagaagccgctgcgctcgcccgcgccggacgcgatccgc
gccgcgctgctggacggattgcgcaccgaggggctcggcctgctgcgctggtcggaggac
gggaagcgactgcgcgaacgtctgtccttcctgcaccgggtactggggccaccttggccc
tccgtcgccgacgccgacctgatgtccactttggacagctggctcgacctcggtacggca
cgccgccgatcggatctggcctcgctggacgcgggtgccgcgctgcgcggtctgctcccc
tggcccgaggcgtcgcgtttggacgaactggcgccggaccggctggaggtgccgtcgggt
tcgcggatccgggtcgactactcgggcgagcagcctgtgctggcggtcaaactgcaggag
accttcggctggctcgcgacgccggagctggcgggtgtccccgtcgtgctccacctgctc
tcccccgccgggcggcccgccgcggtcaccgccgatctggaatcgttctggtgcaacggt
tacgctgccgtacgggccgatcttcgcggacgctacccgaaacatccgtggccggaggac
ccgctgaccgccgcgcccacccggcgcacgtcacgaggtcagtccatcaactga
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