Amycolatopsis keratiniphila: AORI_2583
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Entry
AORI_2583 CDS
T02678
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AORI_2583 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoi03021
]
AORI_2583 (rpoD)
Transcription machinery [BR:
aoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AORI_2583 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
HC2
Motif
Other DBs
NCBI-ProteinID:
AGM05171
UniProt:
R4SYD0
LinkDB
All DBs
Position
complement(2750483..2751883)
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AA seq
466 aa
AA seq
DB search
MAAARTATRSGTKTATAAGEPADEAATDAAKPAARKTAAKAAGAKKAPAKKAPAKKPSTK
SAKTEDGDPEDGPGDLDEADLETPDLSDLEEVEVDVVDASVTEETDEDAESEEDVEETPA
RGRRTSTDKNAGKSSDNPDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN
AEEEVELAKRIEAGLYAAERVRNAEEEGEKLVTQMRRDLKWIVRDGERAKNHLLEANLRL
VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ
ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPIS
LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLT
DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccgcaagaaccgcaacccgaagcgggacgaagacagcgaccgcagccggcgag
ccggccgacgaggcagccaccgacgcggcgaagcccgcggcgcgcaagaccgccgccaag
gcggccggcgcgaagaaggccccggcgaagaaggctccggccaagaaacccagcaccaag
agtgcgaagaccgaagacggcgacccggaagacggtcccggtgacctcgacgaggccgac
ctcgagaccccggatctgtccgacctcgaagaggtcgaggtggatgtcgtcgacgcttcc
gtcaccgaggagacggatgaagacgcggagtccgaggaggacgtcgaagagacgcccgcc
cgcgggcgccgcacgtcgaccgacaagaacgccggcaagtcttccgacaacccggacttc
gtctgggacgaggaagagtccgaggcgctgcgccaggcccgcaaggacgccgagctcacc
gcttcggccgactcggtccgcgcgtacctcaagcagatcggcaaggtcgccctgctgaac
gccgaggaggaggtggagctcgccaagcgcatcgaggccgggctctacgccgccgagcgc
gtccgcaacgccgaggaggagggcgagaagctcgtcacccagatgcggcgcgacctcaag
tggatcgtgcgcgacggtgagcgggcgaagaaccacctcctggaggcgaacctccggctc
gtggtctcgctggccaagcgctacaccggccgtggcatggcgttcctggacctgatccag
gagggcaacctcggcctgatccgcgcggtcgagaagttcgactacaccaagggctacaag
ttctccacgtacgccacctggtggatccgtcaggcgatcacccgcgcgatggccgaccag
gcccgcaccatccgtatcccggtgcacatggtcgaggtcatcaacaagctcggccgcata
cagcgtgaactgctgcaggacctcggccgcgagcccacccccgaagagctcgcgaaggaa
atggacatctccccggagaaggtcctcgagatccagcagtacgcccgcgagccgatctcg
ctcgaccagaccatcggcgacgagggcgactcgcagctcggtgacttcatcgaagactcc
gaggccgtcgtcgcggtcgacgcggtgtcgttcacgctgctgcaggaccagctccagtcg
gtgctgcagacgctgtccgaacgtgaggcgggtgtggtgcggctgcggttcggcctcacc
gacggccagccgcgcacgctcgacgagatcggccaggtgtacggggtgacccgtgagcgc
atccggcagatcgagtcgaagacgatgtcgaagctgcgtcacccgtcgcgttcgcaggtg
ctgcgcgactacctggactga
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