Amycolatopsis keratiniphila: AORI_6476
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Entry
AORI_6476 CDS
T02678
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03030
DNA replication
aoi03430
Mismatch repair
aoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AORI_6476 (dnaE)
03430 Mismatch repair
AORI_6476 (dnaE)
03440 Homologous recombination
AORI_6476 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoi03032
]
AORI_6476 (dnaE)
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_6476 (dnaE)
Enzymes [BR:
aoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AORI_6476 (dnaE)
DNA replication proteins [BR:
aoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AORI_6476 (dnaE)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AORI_6476 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGM09059
UniProt:
R4T0D2
LinkDB
All DBs
Position
complement(7275024..7278533)
Genome browser
AA seq
1169 aa
AA seq
DB search
MDSFVHLHVHTEYSMLDGAAKIAPLFAEARRLGMPAVGMTDHGNMYGADEFYRQSVRAGL
KPVIGIEAYLAPESRFHKKPVFWGRRGDGGDVSGGGAYTHMTMLAENATGLRNLFKLSSL
ASLEGYYRKPRMDRELLARHHEGVIATTGCPSGEVQTRLRLGQPDEAIQAASDYRDIFGA
DGFFLELMDHGLPIERSVRDGLLDIGRRLDLKPLATNDSHYVTRDQAPAHSALLCVQSGK
TLDDPGRFKFDGDGYYLKSAQEMREYWDKEVPGAADSTLLVAERVEPYDDVYRHVDRMPV
FEVPEGHDEESWLREEVAAGLRRRLPDGVPEAYLARADFEIGVIADKGFPAYFLITADLM
NHARRVGIRVGPGRGSAAGSLVAYALGITNLDPIDLGLLFERFLNPERVSMPDIDMDFDD
RRRGEMIRYATDKYGAEHVAQVITFGTIKTKAAIKDAARVHYGQTGYAIADRISKTLPPP
VAAKDIPLAGIVEPDHERYAEAAEVRALLESDGEAAKIFETARGLEGLIRNAGVHACAVI
MSSEPLLDAIPLWRRDDGAVITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALDNIKANRG
EDIDLDTLGVDDPATYALLARGDSLGVFQLDGGAMRDLLRRMGPTGFGDIIAVNALYRPG
PIAMNTHNNYADRKNGRQPIESIHPELAEPLREILAETHGLIVYQEQIMRIARDVAGYSM
GRADVLRKAMGKKKKEVLEKEFEGFRDGMLVNGFSLAAVRALWDAILPFAGYAFNKSHAA
GYGLVGYWTAYLKANYPAEYMAGLLTSVGDNKDKSAVYLSECRRLGIEVLPPDVNESGLR
FAAVGDAIRFGLGAVRNVGANVVDSIIKTRREKGKYASFTDFLDKSELLACNKRVIESLA
KAGAFDSLGHTRLSVVRVHEDAVDAVVPLKRKQAMGQFDLFGSGEEREEDTSPLAHLKYG
VEEWPRKELLAHEREMLGLYVSAHPLDGAEHVLRAHAPRPIAAILDHPPREGELVVAGLI
TSLERRVNKKGEPWAICTIEDLDAALEVLFFPKAYALFAADLAEDNAVRVSGRVNWREDR
MSVFGGGLVPLDLSAGEPPLTLHATAERLTEDAVLELKRTLLVHKGRTPVRVKLAETWYA
LDDYPVAVSSTLLGELKSIPGITPRAAAS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggactccttcgtgcacctgcacgttcataccgagtactcgatgctcgacggcgccgcc
aagatcgcgccgctgttcgccgaggcccggcggctcgggatgcccgccgtgggcatgacc
gaccacggcaacatgtacggcgcggacgagttctaccggcagtccgtccgggccgggctc
aagccggtgatcggcatcgaggcctacctcgcgcccgagtcgcgtttccacaagaaaccg
gtgttctgggggcgacgtggcgacggcggcgacgtctccggcggcggcgcctacacacat
atgaccatgctcgcggagaacgcgaccgggctgaggaacctgttcaagctgtcctcgctg
gccagtttggagggctactaccgcaagccccggatggatcgcgaactcctcgcccggcac
cacgaaggcgtcatcgccaccaccggctgcccgtccggcgaggtgcagaccaggctccgg
ctcggccagccggacgaggcgatccaggcggcttcggactatcgcgacatcttcggcgcg
gacggcttcttcctcgaactgatggaccacggtctcccgatcgagcgttccgtgcgggac
gggctgctggacatcgggcgcaggctggacctgaaacccctggccaccaacgattcgcac
tacgtcacccgggatcaggccccggcgcattcggcactgctgtgcgtccagtccggcaag
acgctcgacgaccccggccggttcaaattcgacggcgacggctactacctcaagtccgcg
caggagatgcgggagtactgggacaaggaggttccgggcgcggcggattccacgctgctc
gtcgccgaacgggtcgagccttacgacgacgtctaccggcacgtcgaccggatgccggtc
ttcgaagtccccgaaggacacgatgaggaatcctggctgcgggaggaggtcgcggccggg
ctccgccgccgtctgccggacggcgtccccgaggcctatctcgcccgtgccgacttcgag
atcggcgtgatcgccgacaagggtttcccggcgtacttcctgatcaccgccgacctgatg
aaccacgcccgccgcgtcggcatccgagtcggtcccggccgcggttcggcggccggctcg
ctcgtggcgtacgcgctcggcatcacgaacctggacccgatcgacctcggcctgctcttc
gaacggttcctcaaccccgaacgggtctccatgcccgacatcgacatggacttcgacgac
cggcggcgcggcgagatgatccggtacgccaccgacaagtacggcgccgagcacgtcgcc
caggtgatcaccttcggcaccatcaagacgaaggcggccatcaaggacgccgcccgcgtc
cactatggacagaccgggtacgcgatcgcggaccggatctcgaagacgctcccgccgcct
gtcgcggcgaaggacatcccgctcgccgggatcgtcgagccggaccacgagcggtacgcc
gaagcggcggaggtccgggcgctgctggaaagcgacggcgaggcggccaagatcttcgag
accgcgcggggcctcgaagggctgatccgcaacgcgggtgtgcacgcctgcgccgtcatc
atgtcgagcgaaccgctgctcgacgcgatcccgttgtggcgccgggacgacggcgcggtc
atcaccggctgggactacccgtcgtgtgaggccatcggcctgctgaagatggacttcctc
ggcctgcggaacctcaccgtcatcggtgacgcgctcgacaacatcaaggccaaccgcggc
gaggacatcgacctcgacacgctcggcgtggacgatccggcgacctacgcactgctcgcc
cgcggcgacagtctcggcgtcttccagctcgacggcggggcgatgcgggatctgctgcgc
cgcatggggccgaccggtttcggcgacatcatcgcggtgaacgcgctgtaccggccgggg
cccatcgcgatgaacacgcacaacaactacgcggaccgcaagaacggcaggcagccgatc
gagtcgattcatcccgaactggccgagccgctgcgcgagatcctggccgagacccacggc
ctgatcgtgtaccaggaacagatcatgcggatcgcgcgcgacgtcgccggctattccatg
ggccgcgccgacgtgctgcgcaaggcgatgggcaagaagaagaaagaggtgctggagaag
gagttcgaagggttccgcgacggcatgctcgtcaacggtttctccctcgcggccgtgcgt
gcgctctgggacgcgatcctgccgttcgccgggtacgcgttcaacaagtcacacgccgcc
ggttacggcctggtcggctattggaccgcgtacctgaaggcgaactacccggccgagtac
atggcgggcctgctgacttcggtgggggacaacaaggacaagtcggcggtctacctctcg
gaatgccgtcggctggggatcgaggtgctgccgccggacgtcaacgaatcggggctcagg
ttcgccgcggtgggcgacgcgatccggttcgggctgggcgcggtgcgcaacgtcggcgcg
aacgtcgtcgactcgatcatcaagacccggcgggagaaggggaagtacgcgtcgttcacc
gacttcctcgacaagtcggaactgctggcctgcaacaaacgcgtcatcgaatcactggcc
aaggcgggcgcgttcgactcgctcgggcacacgcggctctcggtcgtgcgggtgcacgag
gacgcggtggacgccgtggtgccgctgaagcgcaagcaggccatggggcagttcgacctc
ttcgggtccggtgaggaacgcgaggaggacacctcgccgctcgcgcatctcaagtacggc
gtcgaggagtggccgcgcaaggaactgctggcccacgaacgggaaatgctcgggctctac
gtgtcggcgcatccgctcgacggggcggagcacgtcctgcgcgcgcacgcgccccggccg
atcgcggcgatcctcgaccatccgccgagggagggggaactggtcgtcgccgggctcatc
acgtcgctggaacggcgggtgaacaagaagggcgagccgtgggcgatctgcacgatcgag
gatctggacgccgcgctcgaagtgctgttctttcccaaggcgtacgcgcttttcgccgcg
gatctggccgaggacaacgccgtccgcgtcagcggccgggtgaactggcgggaggacagg
atgtccgtgttcggcggcggactcgtaccgctcgacctttccgcgggggaaccaccgctg
accctgcacgcgaccgccgagcggctgaccgaggacgcggtcctcgaactgaagcggact
ctgctggtacacaaaggacggacgccggtccgggtgaagctcgccgagacgtggtacgcg
ctcgacgactaccctgtcgccgtcagctcgacgctgctgggtgagctgaagtccattccc
ggcatcacgccgcgcgccgctgcatcctga
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