Amycolatopsis keratiniphila: AORI_7010
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Entry
AORI_7010 CDS
T02678
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AORI_7010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_7010 (mfd)
Enzymes [BR:
aoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AORI_7010 (mfd)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AORI_7010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AGM09592
UniProt:
R4TFS5
LinkDB
All DBs
Position
complement(7821960..7825442)
Genome browser
AA seq
1160 aa
AA seq
DB search
MLELQGAIATRQLVAGALAADEGAGRPVLAVTATGREADELTASLKSFLGEGAVVDFPSW
ETLPHERLSPRADTVGRRLEVLHRLKTGADDLRVVVATVRSLIQPMAPGLGSLAPIDLVV
GEEQSFEGLLERLVELAYTRVDMVEKRGEFAVRGGILDLFGPTAQHPVRVEFWGDEVSEI
RAFAVSDQRSLPGEIQHVSAPPCRELLLTEPVRAKAAELATTYEADAQLTEMLTKLSGGV
PVEGMEALIPVLCEGELDLLTDAMPQGTHVLLADPEKIRARAADLVRTGQEFLEASWTTA
AAGGQAPIDLGASAYRDLAEIAKHAQETKRPWWTLTQLASDDPDVYRVSIEAAPNYRGEV
ERATTDLRAHTAAGGTAVLVVAGHGTAARAVEQLSAGEVPASLAEGITGPLTPGVVTVTC
GGLSDGFVSPERALVVLSESDLTGRGSGAGTSTKDFSTKMPSRRRNAVDPLALKAGDYVV
HDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRGHPGDRLFVPTDQLDEVSRYVGGELP
TLNKLGGSDWKNTKAKAKKAVKEIAAELVQLYAARQAAPGHAFAQDTPWQGELEDAFPFT
ETNDQLAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHLNTFTERMSSFPVKIKGLSRFTSKPESDAILEQLASGDVDIVIGTHRLLQTGIRY
KDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPP
EDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYVHNRVSSIEKAAKRIRELVPEARVVT
AHGQMNEEKLEKIIQGFWENEYDVLVCTTIVETGLDISNANTLLVERGDLLGLAQLHQLR
GRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILG
AEQSGHIAGVGFDLYVRLVGEAVDAFRRHAGAETSEEEELAEVRVDLPVDAHIPHDYVPG
ERLRLEAYRKIAAAPDQAGLDAVREELIDRYGQPPAPVRRLLAVAAFRHTCRAAGVTEVA
VQGTSIRFAPLPLADSQLVRLKRLYPKALYKAVTNTVSVPKPTEGPAGGRMGAPALRDEE
LLDWCAKLLTNLMKSPAPVA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaactccagggcgcgatcgccacccgccagctggtcgccggtgccctcgccgcg
gacgagggcgccggccgccccgtgctcgcggtgaccgcgaccggccgcgaggcggacgaa
ttgaccgcttccctgaagtcgttcctcggcgagggcgccgtcgtcgacttcccgtcctgg
gagacgctgccgcacgagcggctgtccccgcgggcggacaccgtcgggcggcggctggag
gtgctgcaccggctcaagacgggcgccgacgacctgcgcgtcgtcgtcgcgaccgtccgc
agcctgatccagccgatggcgcccgggctcggttcgctcgccccgatcgacctggtcgtc
ggcgaggagcagagcttcgaagggctgctggagcggctggtcgagctcgcgtacacgcgc
gtggacatggtcgagaagcgcggcgagttcgccgtgcgcggcggcatcctcgacctgttc
gggccgacggcgcagcatccggtgcgggtcgagttctggggcgacgaggtcagcgagatc
cgcgcgttcgcggtgtccgaccagcggtcgctgccgggcgagatccagcacgtcagcgcg
ccgccctgccgcgagctgctgctcaccgagccggtccgggcgaaggccgccgagctcgcg
acgacgtacgaggccgacgctcagctcaccgagatgctcaccaagctctccggcggggtc
cccgtcgagggcatggaggcgctcatccccgtgctgtgcgagggcgagctggacctgctg
accgacgcgatgccccagggcacgcacgtactgctggccgatccggagaagatccgcgcc
cgcgcggccgacctggtccgcaccgggcaggaattcctcgaagcgtcctggaccacggcc
gccgcgggcggtcaggcgccgatcgatctcggcgcgtccgcgtaccgggatctcgcggag
atcgcgaagcacgctcaggagacgaagcgtccttggtggacgctgacgcagctcgcgagc
gacgatcccgacgtctaccgcgtctcgatcgaggccgcgccgaactatcgcggcgaggtc
gagcgagcgacgaccgatctgcgcgcccacacggccgcgggcgggacggccgtgctcgtc
gtcgccgggcacggcaccgcggcccgcgccgtcgagcagctgtcggcgggagaagtgccc
gcgtcgctcgccgaaggcatcacaggtccgctgacgccgggcgtcgtgacggtgacgtgc
ggcggtctgtcggacggtttcgtctcgccggagcgcgccctcgtcgtactgtccgaatcg
gacctcaccggccgcggctctggcgccgggacgtccacaaaggacttcagcaccaagatg
ccgtcgcggcgccgcaacgccgtcgacccgctcgccctcaaggcgggcgactacgtcgtg
cacgaccagcacggcatcgggcggttcgtcgagatggtgcagcgcaccgtcgccggcgcg
acccgcgagtacctgctgctggagtacgcctcctccaaacgcgggcatccgggggaccgg
ctgttcgtcccgaccgaccagctcgacgaggtctcccgctacgtcggcggcgagctgccc
acgctgaacaagctcggcgggtcggactggaagaacaccaaggccaaggcgaagaaggcg
gtcaaggagatcgccgccgaactcgtgcagctctacgccgcgcggcaggccgcgccgggg
cacgcgttcgcgcaggacaccccttggcagggcgaactcgaggacgccttcccgttcacg
gagaccaacgaccagctcgccgcgatcgacgaggtcaaggcggatatggaacgcggcgtc
ccgatggaccgcgtcatctgcggtgacgtgggctacggcaagaccgagatcgcggtgcgc
gcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgcccacgaccctg
ctcgcgcagcagcacctcaacaccttcaccgaacggatgagttcgttcccggtgaagatc
aaggggctctcgcgcttcacctcgaagccggagtcggacgccatcctcgaacagctcgct
tccggcgacgtcgacatcgtgatcggcacgcatcgcctgctgcagaccgggatccgctac
aaggatctcggcctggtgatcgtcgacgaggagcagcggttcggcgtcgagcacaaggag
cacatcaaggcgctgcggacgcacgtcgacgtgctgaccatgtcggccacgccgatcccg
cggacgctggagatgtcgctcgccggcatccgcgagatgtccacgatcctgaccccgccc
gaggacaggcacccgatcctgacctacgtcggcgcgtacgacgacaagcaggtcggcgcc
gcgatccggcgcgagctgctgcgtgacggccaggtcttctacgtgcacaacagggtttcc
tcgatcgagaaggccgcgaagcgcattcgtgagctggtgccggaggcgcgtgtcgtcacc
gcgcacgggcagatgaacgaggagaaactcgaaaagatcatccagggtttctgggagaac
gagtacgacgtgctcgtctgcaccacgatcgtcgagaccgggctggacatctcgaacgcg
aacacgctgctggtcgaacgtggtgacctgctgggcctcgcgcagctgcaccagttgcgc
ggccgggtcgggcgtgggcgcgagcgcggatacgcgtacttcctttatccgccggaggcc
ccgctcaccgagacggcgcacgaccggctcgcgaccatcgcccagaacaccgaactgggc
gcgggtatggccgtcgcgatgaaggacctggagatccgcggcgcgggcaacatcctcggc
gcggagcagtccgggcacatcgcgggagtcggattcgatctgtacgtgcggctcgtcggc
gaagcggtcgacgcgttccgccggcacgcgggcgcggagacctccgaagaggaggagctc
gccgaagtccgcgtggatctcccggtggacgcgcacatcccgcacgactacgtgccgggc
gagcggttgcggctggaggcgtaccgcaagatcgcggccgccccggaccaggccgggctc
gacgccgtccgcgaggaactgatcgaccgctacggccagccgcccgccccggtgcggagg
ctgctcgcggtcgccgcgttccggcacacctgccgcgcggcgggggtcaccgaggtcgcc
gtccagggcacgtcgatcaggttcgcgccgctgccgctggcggattcgcagctggtgcgg
ctgaagcgcttgtaccccaaggctctctacaaggcggtgacgaacacggtttcggtgccg
aagccgacggagggcccggcgggtggccgcatgggcgccccggcgctgcgcgacgaggag
ctgctggactggtgcgcgaagctgctgacgaatctgatgaagtcaccggcgcccgtcgcg
tga
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