Aeromonas oralensis: ACPDZI_03860
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Entry
ACPDZI_03860 CDS
T11252
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aoj Aeromonas oralensis
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aoj03009
]
ACPDZI_03860 (rlmD)
Enzymes [BR:
aoj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACPDZI_03860 (rlmD)
Ribosome biogenesis [BR:
aoj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACPDZI_03860 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
Methyltransf_11
MTS
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_15
Methyltransf_12
PCMT
Methyltransf_23
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_4
PrmA
Motif
Other DBs
NCBI-ProteinID:
XUY24928
LinkDB
All DBs
Position
748084..749406
Genome browser
AA seq
440 aa
AA seq
DB search
MAQFFKPQKKSTQPQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGEQVKARILEDKKQ
YAHAALQQVVTPAANRIAPFCSHYRECGGCSAQHLAEADQRAAKEAGLVSLFERLGNIQP
PALEPVLGGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQSNDLVEIGGCPVLAEPLSVLI
SPLRECLNRLKSQRELGHAELIQAEQGILMLLRHTGRPTEADRAQLIEFAKTQGIDLYLQ
AADEQIEPLHQQFAPSYSLDGLSLAFAPGDFIQVNAPVNQRMVEQALSWLEAGKDDKVLD
LFCGIGNFTLPLARQAREVVGVEGELAMVARAEENARRNGINNARFYKADLSGDIAGMSW
AREGFDLVLLDPARPGACEVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLG
MLDMFPHTGHLESMALFERK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcccagtttttcaagccccaaaagaaatccacccagccccaacgcattgaatttacg
gtagacagcctggatcaccactgcgtcgggatcggccgccaccagggcaaggcgatcttc
atcgaaggggcgctgcccggtgagcaggtcaaggcccgcatcctcgaagacaagaagcag
tatgcccacgccgccctgcaacaggtggtgacgccggcggccaatcgcatcgcccccttc
tgcagccactaccgcgagtgcggcggctgcagtgcccagcacctggccgaagcggatcag
cgcgccgccaaggaggccggactggtcagcctgttcgagcggctcggcaacatccagcct
ccggcgctggagcccgtgctgggcggagagtcccgcgcctatcgccgggtctgccggctg
gccatcaagtttgacaagaacggccgctgcacccgggtgggctttcgtcgtcgccagtcg
aacgatctggtggagatcggcggttgcccggtgctggccgagccgctctccgtgctgatc
agcccgctgcgtgagtgtctcaaccgcctcaagagccagcgggagctgggccatgcggag
cttatccaggccgagcaggggatcctgatgctgctgcgccataccggtcggccgaccgag
gcggatcgggcgcagctgatcgagtttgccaagacgcaggggatcgacctctatctgcag
gcggccgacgagcagattgagccgctgcaccagcagtttgccccctcctactcgctggat
ggcctgtctcttgcattcgcacccggtgacttcattcaggtcaatgcgccggtcaaccag
cgcatggtggagcaggcgctctcctggctggaggcgggcaaggatgacaaggtgctcgat
ctgttctgtggtatcggcaacttcaccctgccgctggcccgtcaggcccgcgaagtggta
ggggtagaaggagagctggccatggtggcgcgcgccgaagagaacgcccgtcgcaacggt
atcaacaatgcccgtttctacaaggcggacttgagcggcgacatcgccggcatgtcctgg
gcacgggaaggctttgatctggtgctgctggatccggcccgccctggtgcgtgcgaggtg
atggagcacgtcgtgaaactttcacccagacgggtggtctacgtttcctgtaatccggtc
accctggcgcgcgacagtcaggtgctggtgaaagggggctaccggctggtgcgcctcggc
atgctcgacatgttcccccataccggccatctggagtccatggcgctgttcgagcgcaag
taa
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