Aeromonas oralensis: ACPDZI_03950
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Entry
ACPDZI_03950 CDS
T11252
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aoj Aeromonas oralensis
Pathway
aoj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACPDZI_03950 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoj03021
]
ACPDZI_03950 (rpoD)
Transcription machinery [BR:
aoj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACPDZI_03950 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Dicty_REP
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
XRJ35688
LinkDB
All DBs
Position
766705..768600
Genome browser
AA seq
631 aa
AA seq
DB search
MYAQPSNTNRMSSMEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQIEDIIQM
INDMGIQVVENAPDADDLIMAEGGTADEDAAEAAAQALASVESEIGRTTDPVRMYMREMG
TVELLTREGEIDIAKRIEDGINQVQSSVAEYPEAITYLLEQYDKYEAEQLRLSDIISGFI
DPNETDDVAPTATHIGSELSEEDLADEDEDEDEDEDGDGDDSDDDGDGGPDPEVAREKFG
DLRAQYEVTRLSIQQNGRAHEDTQAAIAQLADVFRQFRLMPKQFDRLVNNMREMMERVRV
QERIIMKLCVEQAKMPKKTFVAAFTNNECETAWFEYQKQAGKAWSPRLVEMDEDVLRAIG
KLQQIEEETGLSIAQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL
DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
LNRISRQMLQEMGREPNPEELAMRMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDF
IEDTTLALPADAATSESLRNATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDV
TRERIRQIEAKALRKLRHPSRSEVLRSFLDE
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ctgtacgcgcaacctagcaacaccaaccggatgagttctatggagcaaaccccgcagtct
cagcttaaactcctcgttgccaaaggtaaagaacagggctacctgacctatgccgaggtg
aacgatcacctcccgcaagacattgtcgactctgaccagatcgaagacatcatccagatg
atcaacgacatgggcattcaagtggtggaaaacgccccggatgccgatgaccttatcatg
gctgaaggtggtaccgccgatgaggacgctgccgaagcagcggcccaggcactggcatct
gttgaatccgagattggtcgtacgaccgatcccgtccgcatgtacatgcgggaaatgggt
accgtcgaactgttgactcgcgaaggcgaaatcgacatcgccaagcgcatcgaagacggt
atcaaccaggtacaaagctccgtcgccgagtacccggaagcgattacctatctgcttgag
cagtacgacaaatacgaagcggaacagctgcgtctgtccgatatcatttccggcttcatc
gatcccaacgagaccgatgacgtcgccccgactgccactcacatcggctccgagctcagc
gaagaagatctggctgacgaagacgaagacgaagatgaagacgaagacggtgatggcgat
gattccgacgatgatggcgacggtggcccggatccggaagtcgctcgcgagaagttcggt
gatctgcgcgcccagtacgaagtaactcgtctctccattcagcagaatggtcgtgcgcac
gaagatactcaggctgcgattgcccagctggccgatgtattccgtcaattccgcctgatg
cccaagcagttcgatcgcctggtcaacaacatgcgcgagatgatggagcgggtccgcgtg
caggaacgcatcatcatgaaactctgcgttgagcaggccaagatgccgaagaagaccttc
gttgcggccttcaccaacaacgagtgcgaaactgcctggttcgaataccagaagcaggcc
ggcaaggcctggtcaccgcgtctggtcgagatggacgaagatgtgctgcgcgccatcggc
aagctgcagcagatcgaggaagagaccggtctgtccattgcccagatcaaggacatcaac
cgtcgcatgagcatcggtgaggccaaggcccgccgtgccaagaaagagatggtcgaggcc
aacctgcgtctggttatctccatcgcgaagaagtacaccaaccgcggtctgcagttcctg
gatctgatccaggaaggcaacatcggtctgatgaaggcggtagacaagtttgaataccgt
cgtggctacaagttctcgacctatgcgacctggtggatccgtcaggccattacccgctcc
atcgcggatcaggcccgtaccatccgtatcccggtacacatgatcgagaccatcaacaag
ctcaaccgtatctcccgtcagatgctgcaggagatgggtcgcgaaccgaacccggaagag
ctggccatgcgcatgggcatgccggaagacaagatccgcaaggtactgaaaatcgccaaa
gagcccatctccatggagacgccgatcggtgatgatgaagattcccacttgggcgacttc
atcgaagataccaccctggccctgccggccgatgcggccaccagcgagagcctgcgcaac
gccacccgcgaagtgctggccggtctgaccgcccgtgaggccaaggtactgcgcatgcgt
ttcggtatcgacatgaacactgaccacaccctcgaggaagtgggcaagcagttcgacgtt
acccgtgagcgtattcgtcagatcgaagccaaggcgctgcgcaagctgcgccacccgagc
cgctccgaagtactgcgcagcttcctggacgagtaa
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