Aeromonas oralensis: ACPDZI_09580
Help
Entry
ACPDZI_09580 CDS
T11252
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
aoj Aeromonas oralensis
Pathway
aoj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
ACPDZI_09580 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoj03400
]
ACPDZI_09580 (sbcB)
Enzymes [BR:
aoj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
ACPDZI_09580 (sbcB)
DNA repair and recombination proteins [BR:
aoj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
ACPDZI_09580 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACPDZI_09580 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACPDZI_09580 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
WSS_VP
Motif
Other DBs
NCBI-ProteinID:
XUY25316
LinkDB
All DBs
Position
complement(1933255..1934682)
Genome browser
AA seq
475 aa
AA seq
DB search
MSKTAHAGSEPTFFFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYL
PEPEACLITGITPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYR
NFYDPYAYAWQNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHA
NAHDALSDVLATIEMAKLVKKAQPKLFGYLFDLRNKSKVKALIDVVTMKPLVHISGMFSP
WQGCASWVSPLAWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPV
KLVHINKCPVLAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGN
NDGDPDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHT
LSETEQKRWRLHCSDYFSRRLPDYVPRLEALAEQNQGNDRNFTILKSLYHYLENL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacagcacacgccggcagcgagcccacatttttctttcacgactacgagact
ttcggcatcagcccggccaaggacagaccggcgcagtttgccggcattcgtaccgacggg
gatttcaacctcatcggcgagccactggtcatctattgcaagccgccggcggactatctg
ccggagccggaggcgtgcctgatcaccggcatcacgccgcaaaaagcgatgaaggacggg
ctgtgcgaggcggatttcatccgtcagatccacgaacagttcgccaccccgggtacctgc
gtgctgggctacaacagcatccgcttcgatgacgaggtgacccgctacaccctctatcgc
aacttctatgacccctatgcctacgcctggcagaacggcaactcccgctgggatattctc
gacatgctgcgggcctgctacgccctgcgcccggaggggatcgagtgggcgtttgatgaa
gagggcaagccaagcttcaagctggagaagctcaccgtcgccaacggcgtggcccacgcc
aatgcccacgatgcgctctcggacgttctggccaccatcgagatggccaagctggtgaaa
aaggcccagcccaagctgttcggctacctgtttgaccttcgcaacaaaagcaaggtgaag
gccctcatcgacgtggtgaccatgaagcccttggtgcacatctccggcatgttctccccc
tggcaggggtgcgcaagctgggtctcgccgctcgcctggcaccccagcaaccagaacgcg
gtgatcatggtggatctgacccgcgaccccaccccgctcatcgagctcaccagcgaggag
atccgcgagcgcctctataccaagaaagaggagctgggggatctggccggtattccggtg
aagctggtgcacatcaacaagtgcccggtgctggcgccggccgccaccctgacggcggag
cgcgccgaccagcttggcatcgaccgggagcagtgccgcaagagcctggatctgctgcgc
gcccaccccgaggtgcgggagaaactggtggaagtgttcaatcaggagtttgccggcaac
aatgacggcgatccggatacccagctctacgccggcttcttcggtcacggcgacaagtcc
accatggatctggtgcgcgccaccccggcggatctgctgggcgagcgggagtttgccttc
accgacgcacggctgccggagatgctgtttcgctaccgtgcccgcaactggccgcacacc
ttgagcgaaacggagcaaaagcgctggcgactgcactgcagcgactacttcagccgccgt
ctgcccgactatgtaccgcgcctcgaggcgctggccgagcagaatcagggtaacgatcgg
aactttaccatcctcaagagcctctatcactacctcgaaaatctgtga
DBGET
integrated database retrieval system
