Aeromonas oralensis: ACPDZI_10920
Help
Entry
ACPDZI_10920 CDS
T11252
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aoj Aeromonas oralensis
Pathway
aoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPDZI_10920 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoj03019
]
ACPDZI_10920 (rne)
03009 Ribosome biogenesis [BR:
aoj03009
]
ACPDZI_10920 (rne)
Enzymes [BR:
aoj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACPDZI_10920 (rne)
Messenger RNA biogenesis [BR:
aoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACPDZI_10920 (rne)
Ribosome biogenesis [BR:
aoj03009
]
Prokaryotic type
rRNA processing factors
ACPDZI_10920 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
XUY25420
LinkDB
All DBs
Position
complement(2244951..2247992)
Genome browser
AA seq
1013 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAP
VVAPAAPTAPEAGLFGKLFKAISGLFGADTAPADVKAPADKPAAQREARKDEGHRHQRDE
TRSRGQRGRRDDNRGNRSPADAAEKREAGANREGGESRNRRPRKEREPRQEREPRAPRPA
REPRAPREPRAEVVVDAAETVDTTMVNNEPRLEKEQKVAERRERRQLRKQIRVDAPASDV
AALPADAPVVAEEASDAVEQHDEQAEGQRRSRRTPRNQRIEGQRRKRINEDARSQREDEE
QSAEGAAPTLTAAAQADAAQVKVEEPAVPVITIPSAEAVAAALQASAALTEHVVPEAVVA
EAHEQAEVVAAEQVVTEAVAAEEAQVAVVNEPVVAEVAAPVAAEVVAVEAPAVETAVVEA
AAAAPAVVVAEVAPLVVEQPAPVAEAEPVIADEAPVAAAVAAPVAKQVKRGGGLLAGARK
ASAPMATPAAAPALPVREPVAHAPLVRSEVASSGRHGGSTAAVNVATSPAGRP
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatctggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgcgtagaacccagtcttgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agtctggccggcagctacctggtactgatgccgaacaatcctcgcgccggtggtatctcc
cgccgtattgaaggtgatgaacggactgaactgaaagaagccctgagcggcctgaccgtg
ccggacggcatgggcctcatcgtgcgtaccgctggtgtgggcaaatccccggaagagctg
gaatgggatctgaacgttctgctcaaccactgggattccatccacaaggcgtcacagagc
cgctccgcgccggtgcttatccatcaggaaagcaacgtcatcgtgcgtgccatccgtgac
tacctgcggcgcgatgtcggcgagatcctgatcgacaacccggtcatcttcgagcgtgcc
aaggcgcatatcgagctggttcgtcccgatttcctcaatcgcgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagatcgagagccagatcgagtcggccttccagcgt
gaagtgcgtctgccctctggcggcagcatcgtcatcgatccgaccgaagcgttgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagactgcgctgcaa
accaacctggaagcggccgacgaaattgcccgtcaattgcgtctgcgcgacctgggtggc
ctgatcgtcatcgactttatcgacatgactccggttcgtcatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggaccgtgcccgcatccaactgggccgtatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgccctcgttgccaggggcagggtgtgatccgtgacaacgaatcactggcgctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggt
caggtgccggtcgatgttgccgcctatctgctcaacgagaagcgtgcctccatcgccagc
ctggaacagcgtaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtaacccgcatccgtcagaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagccgaagcaggctcaggtgatcgagcgcgaa
caaccgctgctgcaaggttttgtccaggcgccccagccggcccccgccgcgccagccccg
gtcgtggctcccgctgcaccgactgcgcccgaagccggtctgtttggcaaactgttcaag
gccatctccggcttgttcggtgccgacaccgcccctgccgacgtgaaggctcctgccgac
aaaccggcagcccagcgcgaagcacgcaaggacgagggtcatcgtcatcaacgcgatgaa
acccgcagccgtggtcagcgtggtcgtcgtgatgacaaccgtggtaatcgcagccctgcc
gatgccgcagagaagcgggaagcgggtgccaatcgtgaaggtggcgaaagccgcaaccgt
cgtccccgcaaagagcgtgagccgcgtcaggaacgcgaaccccgcgctccgcgcccggct
cgtgaaccccgtgctccgcgtgaacctcgcgccgaagtggtcgttgacgcggcagaaacc
gtcgataccaccatggtcaacaacgagccgcgtctggaaaaagagcagaaagtggctgag
cgccgcgaacgccgccaactgcgcaagcagatccgggtcgatgccccggccagcgacgtt
gccgccctgcccgccgatgctccggttgttgccgaagaggcctccgacgcagtagagcag
cacgatgagcaggccgaaggccagcgtcgttcccgtcgtacgccgcgcaatcagcgtatt
gaaggccaacgtcgcaagcgcatcaatgaagatgcccgcagccagcgtgaagatgaagag
cagtctgccgaaggcgctgcccctaccctgacagcagctgcccaggcagatgcagcccag
gtgaaagtggaagaaccggcagtccctgtcatcaccattcccagtgctgaagctgttgcc
gccgccctgcaggcctctgctgcgctgaccgagcatgtcgtgccagaagccgttgtggcc
gaagctcacgagcaggctgaggtcgtggctgcagagcaagtggtaaccgaagcggtagct
gctgaagaagcccaggtagcggttgtcaacgagccagtggttgcagaagttgcggccccg
gtcgcagcggaagtcgttgctgtcgaggcaccggccgtcgagactgccgtggttgaagct
gcagctgctgctccggcagtggttgtagccgaggttgcccctctggtggttgaacagcca
gctccggtcgctgaagctgaacctgtcattgctgacgaggctccggtagccgctgccgta
gcagcccctgtggccaagcaagtcaagcgtggtggtggcctgctggccggtgcccgcaag
gcctctgcgccaatggcaactccggctgcggcccctgctctgccggtacgtgagccggtt
gcccatgcgccgctggtgcgcagtgaagtggcaagctcaggtcgccatggcggcagtacc
gctgccgtcaacgttgcaaccagcccggccggtcgtccttga
DBGET
integrated database retrieval system
