Aeromonas oralensis: ACPDZI_11895
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Entry
ACPDZI_11895 CDS
T11252
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aoj Aeromonas oralensis
Pathway
aoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPDZI_11895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoj03019
]
ACPDZI_11895
Enzymes [BR:
aoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACPDZI_11895
Messenger RNA biogenesis [BR:
aoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACPDZI_11895
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
Helicase_C_2
Cas3-like_C_2
PRAI
Motif
Other DBs
NCBI-ProteinID:
XRJ33071
LinkDB
All DBs
Position
2436975..2438360
Genome browser
AA seq
461 aa
AA seq
DB search
MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML
QRLLANHGRGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAI
KLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAERQ
TLLFSATFSSEIKALADDLLNDPTLIEVDPSNTAAEQVTQRIIQVDRERRRELLSHMIGR
GNWQRVLVFVRTKQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVLVAT
DIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKGIEA
LIGQSLSVEILEGYEPSGKPSRQTLPGSKPVQNPPRARGAANAKGGNGKSAAGKSKAKSD
GGKKPAPARKREVVGEDIGFTPMRRLPKAQRDDYQDNSNEE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaacgaactgggtctgtctccgcacatcctgcgggccgtcaaggagctgggt
tacgaacagccaacccccatccagcaacaagccatccccgccattctggccggacaggat
gtgctcggcggcgcccagacaggcacaggcaaaacggccggtttcaccctgcccatgctg
cagcgcctgctggccaaccatggccgtggccgccgtcaggtgcgggccttggtgctgacc
ccgacccgcgaactggctgcccaggtgggtgagagcatcatcaaatatgcccaccacctg
ccgtttcgcaccctgatcgcctacggcggcgtcagcatcaagcccaatctggatgccatc
aagctcggcatcgacatcctggtggccactccgggccgtctgctggatctgctgacccag
ggggcgctgaccctgtccgagctggaagtgctggtgctggacgaagcggatcgcatgctc
gacatgggcttcatcgtcgacattcgccgcatcatgaaggcgctgccggccgaacggcag
accctgctgttctccgccaccttctcaagcgagatcaaggcgctggcggatgatctgctc
aacgaccccaccctgatcgaggtggatcccagcaacaccgctgccgagcaggtgacccag
cgcatcatccaggtcgaccgggaacgtcgccgcgagctactctcccacatgatcggccgc
ggcaactggcagcgggtgctggtgttcgtgcgcaccaagcagattgccgatcgcctggcc
cagcagatgcaaaaagacgggctcgataccgtcgccatccacggcgacaagagccagggt
gcccgcaaccgggcgctggcggattttcgggaaggcaaggtgcgggtgctggtggcaacc
gacatcgccgctcgcggcctcgacatcgatcagctgccccacgtgatcaacttcgagctg
ccccagatggcggaggattacatccaccgcatcggccgcaccggccgcgccggtcgtggc
ggcgaggccatctcgctggtgagccaggacgagctgggccagctcaaggggatagaggcg
ctgatcggccaatccctctcggtggagatcctggaagggtatgagcccagcggcaaaccg
agccggcagaccctgccgggcagcaagccggtacaaaacccgccgcgcgcccgtggcgcc
gccaatgccaagggcggcaacggcaaatccgccgcaggcaagagcaaggcgaagagcgat
ggcggcaagaagcctgccccagcccgcaagcgggaagtggtgggcgaagatatcggcttt
acccccatgcgccgcctgcccaaagcccagcgcgacgactatcaggacaactccaacgag
gagtaa
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