Aeromonas oralensis: ACPDZI_15920
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Entry
ACPDZI_15920 CDS
T11252
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aoj Aeromonas oralensis
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoj03032
]
ACPDZI_15920 (topA)
03400 DNA repair and recombination proteins [BR:
aoj03400
]
ACPDZI_15920 (topA)
Enzymes [BR:
aoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ACPDZI_15920 (topA)
DNA replication proteins [BR:
aoj03032
]
Prokaryotic type
DNA Topoisomerases
ACPDZI_15920 (topA)
DNA repair and recombination proteins [BR:
aoj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACPDZI_15920 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XUY24300
LinkDB
All DBs
Position
complement(3323583..3326204)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYVVKSSVGHVRDLPTSGSASNEPKKPVIRGIKLSEA
EKAAKDRNALFSRMGINPTAGWQANYQILPGKEKVVSELQSLAEKADTIYLATDLDREGE
AIAWHLREIIGGDDSRYKRVVFNEITKTAIQEAFAQPSELNIHRVNAQQARRFLDRVVGY
MVSPLLWKKLARGLSAGRVQSVAVRLIVDKEREIKAFVPVEFWDLNADLLTADKSDLRME
VVSRNGTDFKPVTQAETFAAVAALEGVDYKVVNREDKPTGSKPSAPFITSTLQQAASTRL
SFGVKKTMMMAQRLYEAGYITYMRTDSTNLSKEAVEAVREYIGEQYGAAYLPSEPNLYGA
KANAQEAHEAIRPSSVLVTAEMLEGMEPDAMRLYDLIWRQFVACQMTPAQYDSSTLTVKA
GEFELKARGRTLRFAGWTKALPPMGRKGEDSQLPAVTVGEILKLVKLDPRQHFTKPPARF
TEAALVRELEKRGIGRPSTYASIISTIVDRGYVRVESRRFFAEKMGEIVTDRLVENFVEL
MNYEFTAKMEDKLDGIAEGSLEWKKVLDAFYAEFTQELEKADKAPEEGGMRANQMVLTDI
DCPDCGRKMGIRTATTGVFLGCSGYALPPKERCKKTINLVSADEFVSATDGEEAETEALR
AKHRCTICGTAMDAYIIDDSRKLHVCGRNPDCDGYEIEKGQFKLKGYEGPSIECDRCGSE
MQLKNGRFGKYMGCTNDTCKNTRKILKNGDIAPPKEDPVPLPELKCTQSDAHFVLRDGAA
GLFLAASNFPKSRETRAPLVEELKRFKERLSPKHQYLADAPASDPDGNPAIVRFSRKTKE
QYVMTEVNGKATGWTAHYDNGKWQESLAKSKKA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcactggtcatagtggagtctccggccaaggccaagaccatcaacaaatat
ttgggcaaggactacgtggtgaaatccagcgtcggtcacgtgcgcgatctgcccaccagc
ggcagcgccagcaacgagcccaaaaaacctgtcattcgcggcatcaagctgagcgaagca
gagaaggctgccaaggatcgcaatgccctgttctcacggatggggatcaatccgaccgca
ggctggcaggccaactaccagattttgcccggcaaggaaaaagtggtcagtgagttgcag
agtctggccgagaaggctgacaccatctatctcgcaaccgacttggatagagagggagaa
gcgatcgcctggcacctgcgcgagatcatcggcggcgacgacagccgctacaagcgcgtg
gtgttcaacgagatcaccaagaccgccatccaggaggcgtttgcccagccatccgagctg
aacattcaccgcgtcaatgcccagcaggcccgtcgtttcctcgaccgggtggtgggttac
atggtctccccgctgctctggaagaagctggcccgcggcctttctgccggtcgggtacag
tccgttgcggtgcgcctcatcgtcgataaagagcgcgagatcaaggcgttcgtaccggtg
gagttctgggatctcaacgccgatctgctgaccgccgacaagagcgatctgcggatggaa
gtggtcagccgcaacggcaccgatttcaagccggtgacccaggccgagaccttcgccgcc
gtggctgccctggaaggggtcgactacaaggtggtgaaccgggaagacaagccgaccggc
tccaagccgtccgcccctttcatcacctctaccctgcagcaggcagcctccacccggctg
agcttcggggtcaagaagaccatgatgatggcccagcgtctctatgaagcgggttacatc
acctacatgcgtaccgactccaccaacctcagcaaagaggcggtcgaggcggtgcgggaa
tacatcggcgagcagtatggcgccgcctacctgccgagcgagccgaacctgtacggcgcc
aaggccaatgcccaggaggcccacgaggcgatccgcccctccagcgtgctggtgaccgcc
gagatgctggaagggatggagcccgacgccatgcggctctatgacctcatctggcgtcag
tttgtcgcctgtcagatgacaccggcccagtacgactcctccaccctgaccgtcaaggcg
ggcgagttcgagctcaaggcgcgcggccgtaccctgcgcttcgccggttggaccaaggcg
ttgccgcccatgggccgcaagggcgaagacagccagctgccggcggtgaccgtcggcgag
atcctcaaactcgtcaagctggatccgcgccagcacttcaccaagccgcctgcccgtttt
accgaagcggcgctggtacgcgagctggagaagcgcggcatcggccgtccgtctacctat
gcctccatcatctccaccatcgtcgaccgtggttatgtgcgggtcgagagccgccgtttc
ttcgccgagaagatgggtgagattgtcaccgaccggctggtggaaaacttcgtcgagctg
atgaactacgagttcaccgccaagatggaagacaagctcgatggcatcgccgaagggagc
ctggagtggaagaaggtgctggatgccttctacgccgagtttacccaggagctggagaaa
gcggacaaggcgccggaagaggggggcatgcgtgccaaccagatggtactgaccgacatc
gattgcccggattgcggccgcaagatgggcatccgtaccgccaccaccggggtgttcctc
ggctgttccggctacgccttgccgcccaaagagcgctgcaagaagaccatcaacctggtc
tccgccgacgagttcgtctccgccaccgatggtgaagaggccgaaaccgaggcgctgcgt
gccaagcaccgctgcaccatttgcggcaccgccatggatgcctacatcatcgacgacagc
cgcaagctgcacgtctgtggtcgcaacccggattgcgatggctacgaaatcgaaaaaggc
cagttcaagctcaagggttacgaagggccgagcatcgagtgtgaccgttgcggatccgag
atgcagctcaagaacggccgcttcggcaagtacatgggttgcaccaacgacacctgcaag
aacacccgcaagatcctgaaaaacggtgatatcgcgccgccgaaggaagatccggtcccg
ctgccggaactcaagtgcacccagtccgacgcccacttcgtgctgcgtgacggggcggcc
ggcctgttcctggccgccagcaacttcccgaaatcccgcgagacccgtgcgccgctggtg
gaagagctcaagcgcttcaaggagcgtctgtcgcccaagcaccagtatctggccgatgcc
ccggcgtcagatcctgacggaaaccccgccatcgtgcgcttcagtcgcaagaccaaggag
cagtacgtgatgaccgaggtcaacggcaaggcgaccggctggacggcgcactacgacaac
ggcaagtggcaggagagcctggccaagtcgaagaaggcgtga
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