Aeromonas oralensis: ACPDZI_22935
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Entry
ACPDZI_22935 CDS
T11252
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
aoj Aeromonas oralensis
Pathway
aoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPDZI_22935 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoj03019
]
ACPDZI_22935 (rhlB)
Enzymes [BR:
aoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACPDZI_22935 (rhlB)
Messenger RNA biogenesis [BR:
aoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACPDZI_22935 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XRJ34299
LinkDB
All DBs
Position
complement(4726706..4727995)
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTTDKFAQMGLEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKT
LAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYG
GEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPATERLSMLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSN
EDKMLLLLSLMEEEWPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILE
DFTKGTVDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLA
CEDYAFNLPAIEEYIHHPIPVSKYDREALLDDVTAPKRVFRNRQPVNRNMRDRQGGGNSN
NRRRPPRKS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacgaccgacaaattcgcccaaatgggcctcgaacccgaagtt
ctggctggtctggaatcaaagggatttcactattgcacccccatccaggcactgtctctg
ccactgctggtagaaggtcatgacctcgccggtcaggcccagacagggaccggcaaaacc
cttgccttcctggccgccaccttcaactatttgttgacccatccgctgaccaagccgcgc
ctcatcaaccagccgcgcgccatcatcatggccccgacccgggagctggcggtccagatc
tacaacgacgcggagagcatgtccgcctcgaccggcctcaagctcggcctcgcctacggt
ggcgaagggtacgacaagcagctggccgtgctggaacagggtgtcgacatcctgatcggc
accaccggccgcatcattgactacttcaagtccaaggtcatcgatctgagcaatattcag
gtcgtggtgctggacgaagcggatcgcatgttcgatctcggcttcatcaaggacatccgt
ttcctgttccgccgcatgccgcccgccaccgagcgtctgagcatgctgttctccgctacc
ctctccctgcgggtgcaggagctggcctacgaacacatgaaccacccggaacatgtgcag
atcgagccggagcagatgactggcgtgcggatcaaggaggagctgttctacccctccaac
gaagacaagatgttgctgctgctctccctgatggaagaggagtggccggagaaagccatc
gtcttcgccaacaccaagcacgtctgtgaagacgttcatgcctggctggagaacgacggc
caccgcgtcggcctgctgaccggcgacgtgccgcagaagaagcggatgaagatcctggaa
gacttcaccaagggcacggtcgacatcctggttgccaccgacgtggccgcccgcggtctg
cacattccggacgtgacccacgtcttcaactatgacctgcccgacgacgccgaagactac
gtacaccgcatcggtcgtaccggtcgtgccggcaagagcggtcactccatcagcctggcc
tgtgaagactatgccttcaacctgccggccatcgaggagtatatccaccacccgatcccg
gtcagcaagtatgaccgtgaggcgctgctggatgacgtgaccgcaccgaagcgggtgttc
cgcaaccgtcagccggtgaatcgcaacatgcgcgatcgccagggcggtggcaacagcaac
aaccgccgtcgtccgccccgcaagagctga
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