Alistipes onderdonkii subsp. vulgaris: A3BBH6_05280
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Entry
A3BBH6_05280 CDS
T06406
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aok
Alistipes onderdonkii subsp. vulgaris
Pathway
aok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3BBH6_05280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aok03019
]
A3BBH6_05280
03009 Ribosome biogenesis [BR:
aok03009
]
A3BBH6_05280
Enzymes [BR:
aok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3BBH6_05280
Messenger RNA biogenesis [BR:
aok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3BBH6_05280
Ribosome biogenesis [BR:
aok03009
]
Prokaryotic type
rRNA helicases
A3BBH6_05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBL00292
LinkDB
All DBs
Position
636318..638366
Genome browser
AA seq
682 aa
AA seq
DB search
MHMTITDDFSALGLSEQMLAAVRAKGFETPTAIQKLTIPHLLTKPNDIIAQSQTGTGKTA
AYGLPILQTLEPARGPIQAIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQL
RRLAKGIDIVVGTPGRVLDHIRRGTMKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSD
ERRVLLFSATMPERIIRLSKTYMRDTEIVRVEHKQITADLTEQIYFEVREADKFDALTRI
IDVEPEFYGIIFARTKIGADETASRLTARGYAAEVLHGDVSQAQREKILRKFRDRTINIL
VATDVAARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNN
LMRDIKVEIKRETLPSPQDIVEMKRLKIKEEMQEIVENESYDGYKEFAEELLAEHTPDIA
LGALLRLAFRSELDQNNYPEIRSFSVDRKGTARLFLAVGKRDGYTARKLVDMLKFKCGLR
DKYINDVQISDNFSFVSVPFRDAEEVVRKLNRLNRGRRPMAEIARDGENGAQEAPVRRPR
RTKTEDYQAAGQTYAPAPKKPARNVKPATPVPATPTAYAPAPAHDETVHAEPSHDETAYD
PTSSPRRKLKTKTQPHPDIPDFSKMPNEGFDWSAFMKFDEGTAWGRDENGKGKGKATKSV
RKTPKKTVTAAQRVAAKGKKRK
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcacatgaccattacagacgatttcagcgccctggggctttccgagcaaatgctcgcc
gcagtccgcgccaagggattcgagacgcccaccgcaatccagaagctcaccatcccccac
ctgctcacaaaacccaacgacatcatcgcgcaatcgcagaccggcacgggcaaaaccgca
gcctacggactgccgatactccagaccctcgaacccgcccgcgggccgatacaggccatc
atcctcgtaccgacacgcgaactcgcactccaggcggccgaagaactgctctcctacaac
cgcgaaaagcggctctcgatcacggccatttacggcggtgcggcgatgagcgaacagctg
cggcgccttgccaaaggcatcgacatcgtcgtcgggacaccggggcgcgtgctcgaccac
atccgccgcggcacgatgaaactggaaaacgtccgttacctcgtgctcgacgaagccgac
gagatgctcaacatgggcttcgtggaggacgtcgaagagatcatgagccacaccagcgac
gagcggcgcgtgctgctcttctcggcgacgatgcccgagcgcatcatccggctttcgaaa
acctacatgcgcgacacggagatcgtgcgcgtggaacacaagcaaatcacggccgacctc
acggaacaaatctatttcgaggtacgcgaggccgacaagttcgacgccctgacccgcatc
atcgacgtcgaacccgaattctacggcatcatcttcgcccgcaccaagatcggcgccgac
gaaaccgcctcgcgcctgacggcgcgcggctacgcagccgaggtgctgcacggcgacgtg
tcgcaggcacagcgcgagaagatactccgcaaattccgcgaccgcacgatcaatatcctg
gtggctaccgacgtggccgcccggggcatcgacgtgggcaacctgacccacgttatcaac
tactcgctgccgcaggactcggagagctacgtgcaccgcatcggccgcacgggccgcgcc
ggcaagcagggaacggccatcacgttcgtctcgccctcggagttccgcggcctgaataac
ctgatgcgcgacatcaaggtcgagatcaaacgcgaaaccctcccttcgccgcaggacatc
gtagagatgaaacggctgaagatcaaggaggagatgcaggagatcgtcgaaaacgaaagc
tacgacggttacaaggaattcgccgaagagctgctcgccgaacatacccccgacatagcc
ctgggtgcgctgctgcgcctggcgttccgcagcgagctcgaccagaacaactaccccgaa
atacgctccttctcggtcgaccgcaaggggacggcacggctgttcctggccgtgggcaaa
cgcgacggctacacggcacggaagctggtcgacatgctcaaattcaaatgcggcctgcgc
gacaaatatatcaacgacgtccagatttcggacaacttctcgttcgtgagcgtcccgttc
cgcgatgccgaggaggtcgtccgcaaactcaaccggctgaaccgcggccgccggccgatg
gccgagatcgcccgcgacggggaaaacggggcgcaggaagccccggttcgcaggccccgc
cgcacaaaaaccgaggattaccaggccgccgggcagacatacgccccggcaccgaaaaag
ccggcgcggaacgtgaagccggcaacgcccgtcccggcaaccccgacggcgtacgccccg
gcgcccgcccacgacgaaacggtacacgcagaaccctcacacgacgaaacggcatatgac
ccaacgtcatcgccgcgccggaagctgaaaaccaagacccagccccacccggacatcccc
gatttcagcaagatgccgaacgaaggtttcgactggtcggcatttatgaaattcgacgaa
ggcacggcatggggacgcgacgagaatggcaaaggcaagggcaaagcgaccaaaagcgtc
cgcaagaccccgaaaaagacggtcacagccgcccagcgggtcgccgccaaaggcaagaaa
cggaaataa
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