Bradyrhizobium oligotrophicum: S58_12320
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Entry
S58_12320 CDS
T02484
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aol
Bradyrhizobium oligotrophicum
Pathway
aol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S58_12320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aol03019
]
S58_12320
03400 DNA repair and recombination proteins [BR:
aol03400
]
S58_12320
Enzymes [BR:
aol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S58_12320
Messenger RNA biogenesis [BR:
aol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S58_12320
DNA repair and recombination proteins [BR:
aol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
S58_12320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Fic-like_C
Hydant_A_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAM87242
UniProt:
M4Z383
LinkDB
All DBs
Position
complement(1410842..1412719)
Genome browser
AA seq
625 aa
AA seq
DB search
MPSTPNAPTDRADRALAVLHSVFGLPGFRGAQEKVVRHVAEGGNCLVLMPTGGGKSLCYQ
LPALLRRGCGIVVSPLIALMRDQVAGLLEAGVNAAVLNSTLSREEADEVERRLISGDLDL
LYVAPERLVTPRCLSLLERADIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFPDVPRI
ALTATADELTRKEIAERLSLTDAPQFVASFDRPNIRYEIVDKNNGPAQLKAFIKERHPGD
AGVVYCLSRAKVEDTAAALTEAGITAIPYHAGLDAGVRARNQDRFINEDGVVVVATVAFG
MGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSTAWMAYGLSDIVQQRRMIDESTG
AEAFKRVSIRKLDALVALAETAGCRRKLLLSYFGESPAGDNCGNCDNCVSPPKMRDGKVI
AQKLLSCAYRTGQRFGAMHLIDVLVGRATERVKQFGHDQLSVFGIGRELNEKQWRAALRQ
LVAMGHLAPDSEAYGALKFTETSRGVLKGETPVMLREETAHAARAIRSKSRRGELVPRPG
PADDATLLASLRAWRAEIARKRGVPAYVVLHDATIDGIAAARPTTSGQLRGIPGIGDKKL
EHYGDELLALIAAARPSGSGSPPDG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgccctcaactcccaacgccccgaccgatagggccgatcgcgcgctggccgtgctgcat
tcggtgttcggtctgcccggctttcgtggcgcgcaggagaaggtggtccggcatgtcgcc
gagggcggcaattgcctggtgctgatgccgaccggcggcggcaagtcgctgtgctatcaa
ttgccggccttgctgcgcagaggctgcggcatcgtggtgtcgccgctgatcgcgctgatg
cgcgaccaggtcgcgggcctgctcgaggccggcgtcaacgccgcagtcctgaactcgacg
ctgtcgcgcgaggaagccgacgaggtcgagcggcggctgatatcaggcgatctcgatttg
ctctatgtcgcgcccgagcggctggtgacgccgcgctgcctgtcgctgctggagcgcgct
gatatcgcactgtttgcgatcgacgaggcgcattgcgtgtcgcaatgggggcacgacttc
cgccctgaatatatcggcctctccgtcattgccgagcgctttcccgacgtgccgcgtatc
gcgctgaccgcgaccgccgacgaactgacccgcaaggaaatcgccgagcggctcagcctc
actgatgcgccgcaattcgtggcgagcttcgatcgtcccaacatccgctacgagatcgtc
gacaagaacaacggaccggcccagctcaaggccttcatcaaggagcgccacccgggcgat
gccggggtcgtctactgcctgtcgcgcgccaaggtcgaggacaccgcggccgcgctgacc
gaggccggcatcaccgcgatcccctatcacgccgggctcgacgcaggcgttcgcgcccgg
aaccaggaccgcttcatcaacgaggacggcgtggtagtcgtagccacggtcgcgttcggc
atgggcatcgacaagccggacgtgcgcttcgtcgcccatctcgatctgccgaagagcatt
gaggcctactaccaggagaccgggcgcgcggggcgcgacggcaagccctcgaccgcctgg
atggcctatggcctgtcggacatcgtgcagcaacgccgcatgatcgacgagtccaccggc
gcggaggcgttcaagcgggtgtcgatccgcaagctcgacgcgctggtggcgctggccgag
accgccggctgccggcgcaaactgctcttgagctatttcggcgagagtccagcgggcgac
aattgcggcaattgcgacaactgcgtgtcaccgccgaagatgcgcgacggcaaggtgatc
gcgcagaagctgttgtcctgcgcctatcgcaccgggcagcggttcggcgccatgcacctg
atcgacgtgctggtgggacgcgcgaccgagcgcgttaagcagttcggacatgatcaattg
tcagtgttcggtatcgggcgtgagctcaatgagaagcagtggcgcgcggcgctgcgccag
ctggtggcgatgggccatcttgctcccgacagcgaggcctatggcgcgctgaagttcacc
gaaacgtcgcgcggcgtcctgaagggcgagaccccggtcatgctgcgcgaggagacggcg
cacgccgcgcgagccatccgcagcaagtcgcggcgcggcgagctggtaccgcggccgggc
ccggctgatgacgccaccctgctcgccagcctgcgcgcgtggcgcgcggagatcgcgcgc
aagcgcggcgtgcccgcttatgtggtgctgcacgacgccaccatcgacggcatcgcggcc
gcgcgtccgactacgtcaggacagctccgtggcataccagggattggcgacaagaagctc
gaacattacggcgatgagctgctggcgctgatcgcggcagcgaggccttctggatcagga
tcgccaccagacggttga
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