Bradyrhizobium oligotrophicum: S58_17960
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Entry
S58_17960 CDS
T02484
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aol
Bradyrhizobium oligotrophicum
Pathway
aol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
S58_17960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aol03400
]
S58_17960
Enzymes [BR:
aol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
S58_17960
DNA repair and recombination proteins [BR:
aol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
S58_17960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAM87803
UniProt:
M4Z390
LinkDB
All DBs
Position
2057235..2059964
Genome browser
AA seq
909 aa
AA seq
DB search
MALRKLSTYRKKRDFDKTAEPSGDAKIARAERPRFVIQKHDATRLHYDLRLEFGGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWESENPERGF
EKGDLKFTLDGDKLRGSWVLVRMRHDRTGGKRTNWLLIKHRDEFAREGEANDILDADKSV
ASGRTMEQIAAGKGKAPKPFMLDKAQRMNADAVWRSNRSDSKPSSKHVSASKPKISKSKA
SKPKASKKATEAGEEPKAVAPRTVASLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQ
IRVENGEVTLKTRKGLDWTAKFGAIAEEAAKLPDAIIDGEIVALDKDGNPNFSALQAAIS
AGQTDELIFFAFDLMFAEEFDLRRQPLRERKARLAKLLKASIKGKAPRIRYVEHFETDGE
TVLDSARKLSLEGIVSKKLDSAYHSGRTESWTKAKTRPGHEVVIGGWKTTNGKFRSLMVG
VNKDDHLAYVGIVGTGFGQDTVNEIMPALKAAASDKSPFGGKNAPRRVREVHWLKPELVA
EIEFAGFTGDGNVRQASFKGLRQDKPAREVVAEEPVVTTKVAKPVARAAATVATGGTTVH
KTPSRSKSAATVMGIAISKPDKALWPDAGDGEPVTKLDLANYLEAVGDWMIGHLKGRPCS
IVRAPDGIGGEKFFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHP
WNCAPDVYDVPGRLVFDLDPAPNVAFEEVIAAAKEMRQRLTSLGLESFCKTTGGKGLHVV
TPLRYGARDKVTWPEAKAFAQGVCQWMANDNPDQYLLNMSKKLRKGKIFLDYLRNDRMST
SVAVLSPRAREGATVSMPLTWAQVKNGLDAKRYTIRTVPALLSKAKAWDGYDEAAGSIKP
AIKKLASAS
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctcaggaagctctccacctaccgcaagaagcgcgatttcgacaagaccgcggag
ccgtcgggtgacgccaagatcgcgcgcgctgaacggccgcgcttcgtcatccagaagcac
gacgcaacgcggctgcattacgatctgcggctggaattcggcggtgtgttcaagtcgtgg
gccgtgaccaaggggccttcgctcgatccgcacgacaagcggctcgcggtcgaggtcgag
gatcatccgctcgactacggcgatttcgaaggcacgataccggaaggcgagtatggcggc
gggaccgtgatgctgtgggaccgcggctattgggaaagcgaaaatcccgagcgcggcttc
gagaagggcgacctcaagttcaccctcgacggcgacaagctgcgtggcagctgggtgctg
gtgcggatgcgccatgatcgcaccggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgagttcgcccgcgagggcgaggccaacgatatcctggatgcggacaagtccgtc
gcctcgggacgcacgatggagcagattgcggccggcaagggcaaggcgccgaagccgttc
atgctggacaaggcgcagcgcatgaatgccgatgcggtctggcgctcgaaccgcagcgac
agcaagccgtcgtcgaaacatgtttcagcgagcaagcccaagattagcaaatccaaggcg
agcaaacccaaggcaagcaagaaggcgaccgaggccggggaggagccgaaggccgtggcc
ccgcggacggtggcgtcgttgccggacttcgtgccgcccgagctctgcacgtccgtggcg
caaccgccgagcggcgagggctgggcgcacgagatcaagttcgacggctatcgcgtgcag
atcagggtcgagaacggcgaggtgacgttgaagacccgcaaaggcctggactggaccgcc
aagttcggcgcgatcgccgaggaagcggccaagctgccggacgcgatcatcgatggcgag
atcgtcgcgctcgacaaggacggcaatccgaatttttctgcactgcaggcggcgatatcg
gccggtcagaccgatgagctgatcttctttgcgttcgacctgatgtttgcggaggagttc
gatctgcgccgccagccgctgcgcgaacgcaaggcgcggctcgcgaagctgttgaaggcg
agcatcaaaggcaaggcgccccgcatccgctatgtcgaacacttcgagacggatggcgag
accgttctcgattccgctcgcaagctgtcactggaaggcatcgtctcgaagaagctcgac
tcggcctatcattcgggacggaccgagagctggaccaaggccaagacgcggcccgggcac
gaggtcgtcatcggcggctggaagaccaccaacggcaaattccgctcgctgatggtcggc
gtcaacaaggacgatcatctcgcttatgtcggcatcgtcggcaccggcttcggccaggac
acggtgaacgagatcatgccggcgctgaaggcggcggcgtcggacaagagtccgttcggc
ggcaagaacgcgccgcgtcgggtgcgcgaggtgcattggctgaagccggagctcgtcgcc
gagatcgagtttgctggcttcaccggtgacggcaatgtcaggcaagcctcgttcaagggg
ctgcgtcaggacaagccggcgcgcgaggtcgtcgccgaggagccggtggtgacgaccaag
gttgccaagccggtggcgcgggccgcggccacggtcgcgaccggcggcacgaccgtgcac
aagacgccgtcgcgatcgaagagcgcggcgaccgtgatgggcattgcgatctccaagcct
gacaaggcgctgtggccggacgccggtgacggcgagcccgtcaccaagctcgatctcgcc
aactatctggaagccgtcggcgactggatgatcggccatctcaaggggcggccgtgctcg
atcgtgcgtgcgccggatggcatcggcggcgagaaatttttccagcgtcacggcatgcag
ggcatgtcggacctgctggagctggtcaaggtctcgggcgaccgcaagccgtatctgcag
atcgatcgcgtcgagggattgatcgcggtagcgcaggtcgcggccgtcgagctgcatccg
tggaattgcgcgcccgatgtctacgacgtgccgggccggctggtgttcgatctcgatccg
gcgccgaacgtcgccttcgaggaggtgatcgcggccgccaaggagatgcggcagcggctg
acgagccttggtctggagagcttctgcaagaccacgggcgggaaagggctgcacgtcgtg
acacccttgcgctacggcgcgcgcgacaaggtgacgtggccggaggcgaaggcgtttgcg
cagggcgtgtgccagtggatggccaacgataatccggatcagtatctgctgaacatgtcg
aagaagctgcgcaagggaaagatcttcctggactatctgcgcaacgaccggatgtcgacc
tcggtcgcggtgttgtcgccgcgggcgcgcgaaggcgcgacggtgtcgatgccgctgacc
tgggcgcaggtcaagaacgggctcgatgccaagcgctacacaatccgcacggtcccggct
ctgctctccaaggccaaggcgtgggacggttatgacgaggccgccggatcgatcaagccc
gcgatcaagaagctcgcaagtgcatcatag
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