Bradyrhizobium oligotrophicum: S58_31060
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Entry
S58_31060 CDS
T02484
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aol
Bradyrhizobium oligotrophicum
Pathway
aol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S58_31060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aol03019
]
S58_31060
03009 Ribosome biogenesis [BR:
aol03009
]
S58_31060
Enzymes [BR:
aol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S58_31060
Messenger RNA biogenesis [BR:
aol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S58_31060
Ribosome biogenesis [BR:
aol03009
]
Prokaryotic type
rRNA helicases
S58_31060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAM89105
UniProt:
M4ZSA8
LinkDB
All DBs
Position
3525259..3527226
Genome browser
AA seq
655 aa
AA seq
DB search
MPFPATHPPLARALAERNYDNPTPVQLAVLADDAVDRDLLVSAQTGSGKTVAYGLAMAKD
LLGEAERFERAAAPLALIVAPTRELALQVHRELAWLYQHAGARVVSCVGGMDPRREQREL
EAGAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRR
TLLFSATFPRGIVALAKEYQDDAFRIEVEGDEGGHADIEYRAIRIASGDVEHAVVNVLRF
YESPSAIVFCNTREAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRSRVCVAT
DVAARGIDLAKLDLVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVPPARRRRAEVLLN
MAGIDAVWGATPQAEDIRKLDQERMLQDQVFTEETTPEDLALAQALLAERSPEDIAAALA
RLYRARLPSPEDILDPGQDNGRSRPDRGRDIVRPARGDDRPPAPRTKTGKPSARHGMGEP
SVWFRAAIGRKKNAEARWLLPMICRRGGIDKHDIGAIKISETTTEFEIAARVADAFAANI
RRPDKEDNIRIETLSGPPSGQGAPERPRQDKRPPRREDNETAYHPLRRDEPRAGKDAKPR
SKPHRDGPSKSSHEPAFAKKNKHRDKSSHTGQAFSDRSSRTKAPGGKKAKTKRRG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
ttgccctttcccgcgacacatccgccgctcgcccgcgccctggccgagcgcaattacgac
aatccaacgcccgttcagcttgcggtgctggcggacgacgccgttgatcgcgacctcctg
gtttcggcccagaccggctcgggcaagaccgtggcctacgggctggcgatggcgaaagac
ctgctgggcgaggccgagcggttcgagcgggcggctgcgccgctggcgctgatcgtggcg
ccgacgcgcgagcttgccttgcaggtccatcgcgagctcgcctggctgtatcaacacgcg
ggcgcgcgggtcgtctcctgcgtcggcggcatggatccgcgccgcgagcagcgcgaactg
gaggcgggcgcccacatcgtggtcggcacccccgggcgtctctgcgatcatctgcggcgc
ggccgcctcgacatctcggaattgaaggccgtggtgctcgacgaggccgacgagatgctc
aatctcggctttcgcgaggacatggagttcatcctcgagaccacgccggagacgcgccgc
accctgctgttctcggcgaccttcccgcgcggcatcgtggcgctggccaaggaatatcag
gacgacgcgttccggatcgaggtcgagggcgacgaaggcgggcatgccgacatcgagtac
cgcgccatccgcatcgcgtccggagatgtcgagcacgcggtcgtcaacgtgctgcgcttc
tacgaatctcccagcgcgatcgtgttctgcaacacgcgcgaggccgtgcggcatctgcag
gcggcgctgctggagcgcggcttctcggtggtcgcgctgtccggtgaattgacgcagaac
gagcgaacgctggcgctgcagtcgctgcgcgacgggcgctcgcgggtctgcgtggccacc
gacgtggcggcgcgcggcatcgacctcgccaagctcgatctcgtcattcatgccgaactg
ccgaatgatccggaggtgatgcagcatcgctcgggccgcaccggccgtgcggggcgcaag
ggcgtcagcgtcctgctggtgccgccggcccggcggcggcgcgcggaagtgctgttgaac
atggccggcatcgatgccgtctggggcgcaacgccgcaggccgaggacatccgcaagctc
gatcaggagcgcatgctgcaggatcaggtcttcaccgaggagacgacaccggaagatctg
gcgctcgcgcaggccctgctcgcggagcgctctcccgaggacatcgccgcggccctggcg
cggctctatcgcgcccggctgccgtcgccagaggacattctcgatccaggccaggacaac
ggccgctcgcgccccgatcgcggtcgcgacatcgtgaggccggcgcgtggcgacgatcgc
ccgccggctccgcgaacgaagacgggcaagccgtcggcacgccacggcatgggcgagccc
agcgtctggttccgcgcggcgatcggacgcaagaagaatgcggaggcgcgctggctgctg
ccgatgatctgccgccgcggcggcatcgacaagcacgacatcggcgccatcaagatttcc
gagacgacgaccgagttcgaaatcgccgcgcgcgttgcggacgccttcgccgccaacatc
cgccgtcccgacaaggaggataacatccgcatcgagacgctgtcgggaccgccatcgggg
cagggcgcaccggaacggccgcggcaggacaagcggccgccgcggcgcgaggacaacgag
accgcgtaccatccgctgcgacgtgatgagccgcgggccggtaaggacgccaagccgcgc
agcaagccgcaccgcgacggcccgtcgaaatccagccatgagccggccttcgcgaagaaa
aacaagcatcgcgacaagtccagccacactggacaggcgttctcagacagatcctcgcgg
acgaaggcgccgggcggcaagaaggccaagaccaagcgtcgcggctga
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