Bradyrhizobium oligotrophicum: S58_47240
Help
Entry
S58_47240 CDS
T02484
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aol
Bradyrhizobium oligotrophicum
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aol03016
]
S58_47240
Enzymes [BR:
aol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
S58_47240
Transfer RNA biogenesis [BR:
aol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
S58_47240
Prokaryotic type
tRNA splicing ligases
S58_47240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
HTH_17
CwsA
Motif
Other DBs
NCBI-ProteinID:
BAM90704
UniProt:
M4ZAF0
LinkDB
All DBs
Position
complement(5355264..5356604)
Genome browser
AA seq
446 aa
AA seq
DB search
MRADPYQERARQLAVEAGLDPDARVERPGQRSMPLWCTFRDAARKEQLAREAGALAETVA
GRPQAAQYQNSPLKVFGRHEDATIAQMKNCMAVGNAVAGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAVRLDTQFSAIESDVGAIIKDVAKVISFGIGRKNAERVDHELF
DDADAWRESDMGEYRQKAVGQLGTVGSGNHYVDLMRDGDGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEDSEVGQRYVAAMQLAGRYAYAGREWVTERVRQIIGGVVTD
SVHNHHNYAWRETHGGRDLWVVRKGATPAFPGQRGFVGGSMGDDAVIIEGVESEEAKASL
YSTVHGAGRLFGRKEAKRRFTRAEMDEWLQGRGVTLIGADLDESPMAYRRLPEVLAEHAG
SVKVVHTLRPFAVVMAGDGEFDPFKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgagccgatccctaccaggagcgcgcccgacagctggcggtcgaagccggcctcgat
ccggatgcacgggtcgagcggcccgggcagcgctcgatgccgctgtggtgcacgttccgc
gatgccgcgcgcaaggagcagctggcgcgcgaggccggggcgctggctgagacggtcgcg
ggcaggccgcaggcggcgcagtaccagaacagcccgctgaaggtgtttggtcgccatgag
gacgcaaccatcgcgcagatgaagaactgcatggcggtcggcaacgccgtggccggggtg
atctgcgccgacggtcatctcggctatgcgcagccggtcggcggcgtgatcgcctatgag
aagcagatcagcatctccggtgtcggcttcgacatcggttgcggcaacatggcggtgcgg
ctcgacacgcagttcagcgcgatcgagtccgacgtcggcgcgatcatcaaggatgtcgcc
aaggtgatctcgttcggcatcggacgcaagaacgccgagcgggtcgatcacgagctgttc
gacgatgccgatgcctggcgcgagtcggatatgggcgagtaccggcagaaagcggtcgga
cagctcggcacggtcggatcgggcaaccactatgtcgatctgatgcgcgacggagacggc
ttcgtctggatcggcgtgcatttcggcagccgtggtctcggccacacctcggccacgcgc
tacctcaaggccgccggcggcaaggacggcatgaacgtgccgcccgccgtggtcgacgag
gactcggaggtcgggcagcgctacgtcgccgcgatgcagctcgccgggcgctacgcctat
gcgggacgcgagtgggtgaccgagcgcgtgcgccagatcatcggcggcgtggtcaccgac
agcgtgcacaaccaccacaactatgcctggcgtgagacccatggcgggcgtgatctgtgg
gtggtgcgcaagggcgcgacgccggcctttcccggccagcgcggctttgtcggcggctcg
atgggcgacgacgccgtcatcatcgagggcgtcgagtcggaggaggccaaggcctcgctg
tactcgacggtgcacggtgccggccgcttgttcggccgcaaggaggccaagcggcgtttc
acgcgcgccgagatggacgaatggctgcagggccgcggcgtcaccctgatcggggccgat
ctcgacgagagcccgatggcctatcgccgtctgcccgaggtgctcgccgagcacgccggc
tcggtgaaggtggtgcatacgctgcggccgttcgccgtggtgatggccggcgacggcgag
ttcgatccgttcaaggattga
DBGET
integrated database retrieval system
