Bradyrhizobium oligotrophicum: S58_65970
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Entry
S58_65970 CDS
T02484
Name
(GenBank) putative ATP-dependent RNA helicase with P-loop hydrolase domain, RhlE protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aol
Bradyrhizobium oligotrophicum
Pathway
aol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S58_65970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aol03019
]
S58_65970
Enzymes [BR:
aol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S58_65970
Messenger RNA biogenesis [BR:
aol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S58_65970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
DUF8086
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
BAM92564
UniProt:
M4ZFL6
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All DBs
Position
7461078..7462493
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AA seq
471 aa
AA seq
DB search
MTSFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVVGIAQTGTGKTASFALPI
LHRLLENRIKPQPKTARVLVLSPTRELSGQILDSFNTYGRHIRLSSALAIGGVPMGRQVR
AVMPGLEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIK
RQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPNLLAQLL
KQEPVNRALVFTRTKHGADKVVKSLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLV
ATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGAEGVAISLVAGPDEMSYLRD
IERLIKVSLPREDRRTPGHREAAAPPAKPQQHRGGRPGMQNARANEGGNAAKGPRRRRRS
NAKVPALPGNRQEPQRPSQGGGKAGSIQGVAFLHREGRPKNHAQNRNQRPN
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttgacatcctttcaggattttaacctcgccgacgcgctgacgcgcgcgctgaaggaagag
aactacaccacccccaccccgattcaggcccagaccatcccgatcgcgctccaaggccgg
gacgtggtcggcatcgcgcagacgggaaccggcaagaccgcctcgttcgcgctgccgatc
ctgcaccgcctgcttgagaaccgcatcaagccgcagcctaagacggcgcgcgtgctggtg
ctgagcccgacccgcgaactgtccggccagatcctcgacagcttcaacacctatggccgc
cacatccggctgagctcggcgctcgcgatcggcggcgtcccgatggggcgtcaggtccgc
gccgtgatgcccggcctcgaagtgctcgtcgccacgccgggccggctgctcgacctcgtc
cagggcaatgccttgaagctgagccatgtcgagtttctagtgctcgacgaagccgaccgc
atgctcgacatgggcttcatcaacgacatccggaagatcgtcgccaagctgccgatcaag
cggcagacgctgttcttctcggccaccatgccgaaggacatcgccgagctcgccgatgcc
atgctgagggacccggcgcgggtcgcggtgaccccggtctcctcgaccgtcgagcggatc
gcccagcgcgtgatccaggtcgaccactccgccaagccgaacctgctggctcagctgctc
aagcaggagccggtcaaccgcgcactggtgttcacccgcaccaagcacggcgccgacaag
gtcgtgaagagcctggagaaggccggcatcccggcccaggccatccacggcaacaagtcg
cagaaccaccgcgagcgcactctggcggcgttccgcaccggtgagatccgtacgctggtc
gcgaccgacatcgcggcgcgcggcatcgacgtcgatggcgtcagtcatgtcgtcaatttc
gacctgccgaacgtgcccgagacctacgtccaccgcatcggccgcaccgcccgcgccggc
gccgaaggcgttgcgatctcgctggtcgccgggccggacgagatgtcctacctgcgtgac
atcgagcggctgatcaaggtctcgctgccgcgcgaagatcgccgcacgccgggccatcgt
gaggccgccgccccgccggccaagccgcagcagcatcgcggcggccgtcctggcatgcag
aatgcgcgcgccaacgagggcggcaacgccgcaaaaggccctcgccgtcgtcgccgttcc
aatgctaaggtgccggctctgccaggcaatcgtcaggagccccaacgtccgtcgcaaggc
ggcggcaaggccgggtcgattcagggcgttgctttcctgcatcgcgagggcagacccaaa
aaccacgctcaaaaccgcaaccaacggccaaactag
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