Aquabacterium olei: DEH84_11785
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Entry
DEH84_11785 CDS
T05429
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aon
Aquabacterium olei
Brite
KEGG Orthology (KO) [BR:
aon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aon03019
]
DEH84_11785 (hrpA)
Enzymes [BR:
aon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DEH84_11785 (hrpA)
Messenger RNA biogenesis [BR:
aon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DEH84_11785 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_N
DEAD
AAA_22
HA2_C
nSTAND3
NACHT
T2SSE
AAA_30
AAA_25
AAA_19
SRP54
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AWI54030
UniProt:
A0A2U8FSP1
LinkDB
All DBs
Position
complement(2624086..2628048)
Genome browser
AA seq
1320 aa
AA seq
DB search
MSTLPPITFPESLPVSGKRAEIEAALRDHQVIIVCGETGSGKTTQLPKIALAMGRGGWGQ
VRDPNARRHERPKLIGHTQPRRIAASSVAKRIAEELNTPLGEVVGYKVRFQDRLQPGSSV
KLMTDGILLAETQGDPDLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVIVTSA
TIDAERFAKHFESAKGPAPVIMVSGRLFPVEQRYRPFEESREYGLNEAIADGVDELWREG
SGDILVFLPGEREIREAADHLRKHLAEHRTVAEVLPLFARLSQQEQDRVFQTGNGRRIVL
ATNVAETSLTVPGIRYVIDSGQARVKRYSFRNKVEQLQIEPISQAAANQRAGRCGRVANG
ICIRLYDEKDFTARPRFTDPEILRSSLAGVILRMKSLHLGHVEDFPFIEPPLRKAIADGY
QLLNELGAVDDNNDITPLGQTLAKLPLDPRVGRMILEAKDRQALAEVLVIAASVSVQDVR
DRPIDQQQQADQKHKQFDDEKSEFMGTLKLWKWLDESRGGHGHHAPGEPERHKLSHRKYE
ALLRENFINPRRVREWRDVYAQLHTVVAEHNWRLNGTPATYEQVHLSLLSGLLGNVGVKS
DEDEWYLGARGIKFWKHPGANLSKKPGRWILAAELVETTRLYGRGIANIDAQWLVFMGQH
LLKKQLLEPHWEKKAAEVVALERATLYGLVVYNNKRVNYGLVNAREAREIFIREALVGQE
WETRLPFLAHNRKLIAQVEQLEHKSRRQDVLVDDELIHAFYDAQIPPDVMSGHSFERWYR
HASRENAKLLYLSREELMRHEAAGITSAAFPKVIRLGGVDCAATYLHQPGDARDGVTVTV
PIFALNQVGDERGEWLVPGMLKDKVLALVKSLHQKPRARLVPLPDYAESFVQAAEFGQGS
LMEQLLKAVRDKTQLDIKRADFKLDMLPPHLFMNYRVVDEHGRQLGMGRNLPALKAELGS
LARGAFQALAALKAKEVVQGGEAAAGSADDSVAAVGARKAGQATRVAGGAPGHSASAPAP
AAASKAGSAAGQGKSPSASTPLTDWTFGELPELMEIQRGGHTLVGFPALIDKVSHVEIDI
FDEPDVAAAKHRAGLRRLVALQIREPLKYLERNIPDLQKMAMAYMSLGTADELRDQIIDV
ALDRAYLAEPLPTDAASFKARVEEGRTRLNLIAQEVARLAGTVLTEYAAALRKLKDARPP
KDVADDITAQLQRLMPKRFVAQTPYAQLQHFPRYLKGVVLRLDKLKGDAARDAQRLTELR
PLDQRYTRRLAELKGTHDARLDEFRWLLEELRISLFAQELRTPQPVSVKRLEKTWAQLSA
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtgtccaccctgccgcccatcaccttccccgaatcgctgcccgtcagcggcaaacgtgcc
gagatcgaggccgccctgcgcgaccaccaggtcatcatcgtctgcggcgaaaccggttcg
ggcaagacgacgcagctgcccaagatcgcgctggccatggggcggggcggctggggacag
gtgcgcgatccgaatgcccggcggcatgaacgcccgaagctgatcggccacacccagccg
cggcggattgcggcctccagcgtggccaagcgcatcgccgaagagctcaacacgccgctg
ggcgaggtggtgggctacaaggtgcgcttccaggaccggctgcagcccggttcgtccgtc
aagctgatgaccgacggcatcctgctggccgagacccagggtgatccggacctgcgcgcc
tacgacacgctcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctgctg
ggttacctgcgccagttgttgccgcgccggccggatctcaaggtcatcgtcacctcggcc
accatcgatgccgagcgcttcgcgaagcacttcgaatcggccaaagggcccgcgcccgtc
atcatggtgtcgggtcggctgttcccggtcgagcagcgctaccggccgtttgaagaaagc
cgcgagtacggtctgaacgaggccattgccgatggcgtggacgaactctggcgagagggc
agtggcgacatcctcgtcttcctgccgggcgagcgcgagatccgcgaggccgccgaccac
ctgcgcaagcacctggccgagcaccgcacggtggccgaggtgctgccgctgttcgcccgc
ctgagccagcaggagcaggaccgcgtcttccagaccggcaatggccgccgcatcgtgctg
gccaccaacgtggccgagacctcgctgacggtgcccggcatccgctacgtgatcgacagc
gggcaggcgcgggtcaaacgctactctttccgcaacaaagtcgagcagctgcagatcgag
cccatcagccaggccgcggccaaccagcgggccgggcgttgcggccgggtggccaacggc
atctgcatccgcctgtacgacgagaaggacttcaccgcgcggccgcggttcaccgatccg
gaaatcctgcgcagctcattggccggcgtcatcctgcggatgaagtcgctgcacctgggc
catgtggaggacttccccttcatcgagcccccgctgcgcaaggccattgccgacggctat
cagttgctcaacgagctgggtgcggtcgacgacaacaacgacatcacgccgctgggccag
acgctggcaaagctgccgctcgacccgcgcgtgggccgcatgatcctcgaagccaaggac
cgccaggcgctggccgaggtgctggtgatcgcggcgagcgtgagtgtgcaggatgtgcgc
gaccggcccatcgaccagcaacagcaggccgaccagaagcacaagcagttcgacgacgag
aagtcggagttcatgggcacgctcaagctgtggaagtggctggacgaaagccgcggcggg
cacggacatcacgccccgggcgagccggaaaggcacaagctcagccaccgcaagtacgaa
gccctgctgcgcgagaacttcatcaacccccgccgcgtgcgcgagtggcgggacgtgtac
gcccagctgcacaccgtggtggccgagcacaactggcgcctcaatggcacgcccgccacc
tacgagcaggtgcacctgtcactgctgtccggcctgctgggcaacgtcggcgtcaagagc
gacgaggatgagtggtacctgggtgcgcgcggcatcaagttctggaaacacccgggcgcc
aacctgagcaagaagccggggcgctggatcctggctgccgagctggttgaaaccaccagg
ctgtatggccgtggcattgccaacatcgacgcgcagtggctggtcttcatgggccagcac
ctgctcaagaagcagttgctcgagccccattgggagaagaaggccgccgaggtcgtcgcg
ctggagcgcgccacgctgtatggcctggtcgtctacaacaacaagcgcgtcaactatggc
ctggtcaacgcccgcgaggcgcgcgagatcttcatccgcgaggccctggtcggccaggaa
tgggagacccgtctgcccttcctggcgcacaaccgcaagctgatcgcgcaggtcgagcag
ctggagcacaagtcccgccgccaggacgtgctggtggacgatgagctgatccacgctttc
tacgacgcgcagatcccgcccgacgtgatgagcggccacagcttcgagcgctggtaccgc
catgcgagccgcgagaatgccaagctgctctacctgagccgcgaagagctgatgcgccat
gaggcggcgggcatcacgagcgcggcgttcccgaaggtgatccggctgggcggggtcgac
tgtgctgccacctacctgcaccagcctggcgatgcgcgcgacggcgtgaccgtgaccgtg
cccatcttcgcgctcaaccaggtgggcgacgagcgcggcgaatggctggtgcccggcatg
ctcaaggacaaggtgctggcgctggtcaagagcctgcatcagaagccgcgcgcgcgcctg
gtgccgctgccggattacgccgaatcgttcgtgcaggctgccgagttcgggcagggcagc
ctgatggagcagctgctcaaggccgtgcgcgacaagacgcagctcgacatcaagcgcgcc
gacttcaagctcgacatgctgccgccccacctgttcatgaactaccgcgtggtcgacgag
catggccgccagctgggcatgggccgcaacctgccagcgctcaaggccgaactcggctcg
ctggcgcgcggggccttccaggccctggccgcgctgaaggcgaaggaggtggtgcagggg
ggcgaggcggcagcgggatcggcggacgattcggtggcggcggtcggcgcccgcaaggcc
ggccaggccacccgtgtggcagggggcgcgcccggccactccgcgtccgcgccggcacct
gcagcggcttcgaaagccggcagcgcggcggggcagggcaagtcgccctcggccagcacc
ccgctcaccgactggaccttcggcgagctgcccgagctgatggagatccagcgtggcggc
cacacgctggtcggtttcccggccctgatcgacaaggtcagccacgtcgagatcgacatc
ttcgacgagcctgacgtcgccgccgcgaagcaccgtgcgggcctgcgccggctggtggcc
ctgcagatccgcgagccgctgaagtatctggaaagaaacatcccggacctgcagaagatg
gcgatggcctacatgagcctgggcacggccgacgagctgcgcgaccagatcatcgacgtg
gccctggaccgcgcctacctggccgagccgctgcccaccgatgccgccagcttcaaggcg
cgcgtggaagaaggccgcacccgcctgaacctgatcgcccaggaagtggcccgcctggcc
ggcaccgtgctgaccgagtacgccgccgccctgcgcaagctgaaggacgcccgcccgccg
aaggacgtggccgacgacatcacggcgcagttgcaacgcctgatgcccaagcgcttcgtg
gcgcagacgccgtatgcgcaactgcagcatttcccgcgctacctgaagggggtggtgctg
cgcctggacaagctcaagggcgacgcggcccgcgacgctcagcggctgaccgaactgcgg
ccactcgaccagcgttacacccgtcgcctggccgagctcaagggcacgcacgacgcgcgc
ctggacgagttccgctggctgctggaagaactgcgcatcagcctgtttgcacaagagctg
cgcacgccccagcctgtcagcgtcaaacggctcgaaaagacctgggcgcagctcagtgcc
tga
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