Anastrepha obliqua (West Indian fruit fly): 129236820
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Entry
129236820 CDS
T09777
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03020
RNA polymerase
aoq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129236820
09124 Replication and repair
03420 Nucleotide excision repair
129236820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoq03021
]
129236820
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129236820
Enzymes [BR:
aoq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129236820
Transcription machinery [BR:
aoq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129236820
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129236820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129236820
NCBI-ProteinID:
XP_054727039
LinkDB
All DBs
Position
2:complement(34537169..34545520)
Genome browser
AA seq
1889 aa
AA seq
DB search
MSTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPK
IKEIVMKSKGQPRKRLAYVYDLCKGKTVCEGGEDMDMAKDGQQADPNKKQGHGGCGHYQP
SLRRSGLELTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMI
VTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELKKNEGTGAAAHVIQENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQMMNLLMFLPTWDGKVPQPCILKPRPLWTGKQLFSLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKAFEKRFRFDWSNERYMRKVFTDDVIKELSESGNALPELEIEWDQLCHDRQALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDRL
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEETKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCRYGIEIPSTLGASMIGGSAMFFGAGATPS
MTPPMTPWVQCGTPRYFSPSGQMSGMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSP
GPSMSPYLPPSPSVSPSYSPTSPNYTASSPGAASPNYSPASPNYSPTSPLYPATSPRYST
TPNFAPQSTGYSPSNSGYSPTSPVYSPTSNFQSSSPSFSGSGTNMYSPGSAYSPTSSNYS
PNSPSYSPTSPSYSPSSPSYSPTSPGYSPTSPSYSPSSQHYTPVTPSYSPSSPTYSASPN
YSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYPPGSPQSSPASPKYSPTSPLYS
PSSPQHSPANQYSPTGSSYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPM
YSPTAPSQGYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaaacgattctaaggcgcctttgcgccaagtgaaacgtgtgcagtttggcatt
ttatcacctgatgaaattcgtcgtatgtccgtcacagagggtggcgtgcagtttgctgag
acaatggaaggtggccgacccaagctgggtggtttaatggacccacgccaaggtgtaatc
gacagaacatctcgttgccaaacgtgtgccggcaatatgaccgaatgccccggacatttt
ggacacattgatctagcaaaaccagtttttcacatcggtttcattacaaagactataaaa
atattgcgatgcgtatgtttttactgctcgaaaatgttagtatcgcctcaaaatcctaaa
attaaagagattgtaatgaagtcaaaaggacagccacgcaagcgtcttgcatatgtatac
gatttatgtaagggtaaaacagtgtgcgaaggcggcgaagatatggacatggcaaaagat
ggtcagcaagccgatcccaataaaaaacaagggcatggcggttgcggtcattatcaacca
tcacttagacgtagtgggctagaattaaccgccgagtggaagcatgtaaatgaggactct
caggaaaagaaaattatagtttctgcggagcgtgtttgggaaattttgaaacatataacc
gatgaagagtgttttattcttggtatggatcctaaatatgcacgcccagattggatgatt
gtcacagtgctgcctgtcccaccattggcggtgcgtccggctgtcgttatgtttggggca
gctaagaatcaggatgatttaacgcacaagctggctgatataattaaagccaacaatgaa
ttaaagaagaacgaaggcacaggcgctgcagcgcatgttattcaagagaatataaaaatg
ttgcaattccatgttgctactttagtagacaacgatatgcctggcatgccgcgtgctatg
caaaaatctggaaaaccgctaaaagcgattaaggcgcgtttgaagggcaaagaaggtcgt
attcgtggtaatttgatgggtaaacgtgtcgacttttccgctcgtactgtcatcacacct
gaccccaacttgcgtatcgatcaagttggtgtgccgcgatccattgcgcaaaacttaaca
tttccagaattggttacacctttcaatattgatcgtatgcaggaattagtgcgacgtggc
aattcacaatatcccggcgcaaaatatattgtgcgtgacaatggcgaacgtatagacttg
cgtttccatccaaaaccatccgatttgcatttgcaatgtggctacaaggtggagagacat
ttacgtgatgatgatttggttatcttcaatcgtcagccaaccttgcacaaaatgagtatg
atggggcatcgtgtcaaggtgttgccttggtccacattccgtatgaatttatcttgtact
tctccctacaacgccgattttgacggcgacgaaatgaacttgcacgtaccacaatctatg
gaaacccgtgctgaggttgagaatatacatataacaccacgccagattatcacaccgcag
gctaacaaacccgtcatgggtattgtgcaggatacactgactgctgtacgtaaaatgacc
aaacgtgacgtatttatcactcgtgagcaaatgatgaacttactcatgttcttaccaact
tgggacggcaaagtgccacagccctgtattttgaaaccacgtcctctatggacgggcaaa
caactgttctcattaattattcctggcaatgtaaacatgatacgaacacattctacccat
cctgacgatgaggacgatgggccctacaaatggatctcaccgggtgacactaaggtcatg
gtagaacatggtgaattgataatgggaattttgtgtaaaaagacgctgggtacttccgcc
ggttcactgctgcatatttgtttcttggagttgggtcatgaaattgctggccgtttttac
ggtaatattcagactgtaattaacaattggctgttgttggaaggtcacagcattggtatt
ggagataccattgctgatcctcagacctataatgaaattcagatggccatcaagaaggct
aaagacgatgtcataaacgttattcaaaaagcgcacaacatggagcttgagccaacaccc
ggtaatacattgcgtcagactttcgaaaatcaagtgaatcgtattctaaacgatgctcgt
gacaagactggtggctctgcaaagaaatctttaactgaatacaataacttaaaggctatg
gtggtgtccggttcaaagggttccaacattaatatctcacaggttattgcttgtgtgggt
caacagaacgtcgagggcaaacgtataccatacggtttccgcaaacgaacattgccacat
ttcattaaagacgattacggtcctgagtcacgtggcttcgttgaaaattcatatcttgcc
ggtttaactccttctgaattctatttccacgctatgggtggtcgtgaaggtcttatcgat
actgctgtgaaaactgctgaaactggctatattcaacgtcgtctaataaaggctatggag
tctgttatggttaactacgacggcacagtacgtaactcagtgggccaactgattcagttg
cgttacggcgaagacggtttggctggtgaaacggtagaatttcaaaatctgccaactgtc
aaattgtccaataaggcattcgagaaaagattcaggtttgactggtccaatgaacgttat
atgcgtaaagttttcacagatgatgtgattaaagagctgagtgagagtggcaatgcgctg
cctgaattggaaatcgaatgggatcaattgtgtcacgatcgtcaggccttgcgtgaaatt
ttccccaacggtgattcaaaggtcgtattgccgtgcaatttgcagcgtatgatttggaat
gtgcagaaaattttccatatcaacaagcgcatgccaacagatctctcgccattgcgtgtt
atcaatggtgtgcgcgatttacttcagcgttgtgtcattgtggtgggcaatgatcgtctc
tccaagcaggccaatgagaacgccacgctgctgtttcaatgtttggtgcgttctacgctt
tgtacgaaatatgtagccgaagagttccgtttgtcaactgaagctttcgagtggttgatt
ggtgaaattgaaacgcgtttccagcaagcacaggcaaatcccggcgagatggtaggcgcc
ttggctgcacagagtttgggcgaacctgctacacagatgacactgaacactttccatttt
gctggtgtgtcatcgaagaacgtaacattgggtgtgccgcgtttaaaggaaattatcaac
atttccaagaaaccaaaggcgccttcactaactgtattcctcacgggtggcgcagctcgc
gatgctgaaaaggcaaagaacgtattgtgccgcttggaacacaccacattgcgcaaggta
accgccaatacggcaatttactatgatcccgatccacaaagaacagtcatatcggaggat
caagaattcgttaacgtctactatgagatgcccgatttcgatccgacgcgcatttcacca
tggttgctgcgtattgaattggatcgcaaacgtatgactgataaaaaattgactatggaa
caaattgcagaaaaaattaatgccggctttggtgacgatttgaattgtattttcaatgat
gataacgctgacaaattggtgcttcgcatacgtatcatgaataacgaggaaactaagttc
caagacgaagatgaagctgtcgacaagatggaggacgatatgttcttacgttgcatcgaa
gcgaatatgctttctgacatgacactgcagggcatcgaagccattggcaaagtgtatatg
catttgccgcaaacggacagcaaaaaacgtatagtcattactgagacaggtgaatttaag
gccattggcgaatggttattggaaacggacggtacttctatgatgaaagtgttgtctgaa
cgcgatgtggatccggtgcgtacatcgtctaatgacatttgtgaaattttccaagtgttg
ggcattgaagctgtacgtaaatccgttgaaaaggaaatgaatgctgtgctgcagttctat
ggcttgtacgtgaactatcgtcatttggccttgttgtgtgacgtaatgacggctaagggc
catttgatggccattacgcgtcacggaatcaatagacaggatactggcgcacttatgcgt
tgctcattcgaagaaacagttgacgtgttgatggatgctgctgcgcatgcagaaactgat
cctatgagaggtgtgtccgagaacattattatgggccagctgccccgtatgggcacgggt
tgcttcgatttgttgctggacgccgaaaagtgccgctatggcatcgaaatccctagcaca
ttgggcgcgagcatgataggcggttcggcgatgttcttcggtgcgggcgctacgccgagc
atgacgccaccaatgactccatgggtgcaatgtggcactccacgttatttctcaccatct
ggacaaatgagcggcatgacacctggtggtcccagtttttcaccatcagctgcttctgat
gcatcgggcatgtcacctagctggtcgcctgcccatcccggctcttcccctagctcacct
ggtccgtcgatgtcaccatatttgccgccttcgcccagtgtttccccatcgtattcgcct
acaagtccgaattatactgcttcgtcaccgggtgctgcttcaccgaactactcgcccgct
agtcccaattattcaccgacgagtccgctctaccccgccacgagtccacgttactcaact
acaccgaatttcgcaccgcaatcgactggctactcgccatcaaacagcggctattctccc
acatcccccgtttattcgcctacttcaaactttcaatcgtctagtccgtcgttttcgggc
agtggcacaaacatgtattcacctggcagtgcctattcaccaacttcatccaactattca
ccaaattcgccgagttattcaccaacatcaccatcttactcaccgtcgagtccatcgtac
tcgccaacttcaccgggctattcgccaacttctccttcgtattcgccgtcgtcacaacac
tatactccagttacaccatcgtattccccaagttctcctacctattcggcttccccaaat
tattcacccgcatcgcctgcatactcgcaaacgggtgtcaaatattcgcctacatcacca
acttattcaccaccttctccatcatacgacggctcccctggatcgccgcaatatccgccc
ggttcgccccagtcttcaccggcatcgccgaagtactcaccaacatcgccactttattcg
cccagctcgccccaacattcaccggccaatcaatacagtccaactggatccagctactcg
gcaacaagtccacgctattcgcccaatatgtcgatctactcgcccagtagcactaaatat
tcaccaacatcgccaacatatacgcctacggcgcggaattactcgccaacatcgccaatg
tattcaccaaccgcgccctcacaaggctacagtccgaccagtccagcatattcaccgagt
agtcccacattcgaggagagtgacgattaa
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integrated database retrieval system
