Anastrepha obliqua (West Indian fruit fly): 129240097
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Entry
129240097 CDS
T09777
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129240097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129240097
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129240097
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
129240097
NCBI-ProteinID:
XP_054731578
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Position
3:135710387..135714925
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AA seq
1193 aa
AA seq
DB search
MSKKLNKSGSAGGSSTPSNTLFKYFSRSPATAEKKKIPRIPSEEDSKNLSKDVRKENLEN
GRSFDEEPSAKRKLEIDLNHSRSNKMDLDDDEDEDITIKRSKNKRQRIFDSDDEEGIKPT
VKAKKEDDDKADYKPSDEDDEDSSDDQDVSVTKDTFSKKSDEPKQKKPKLEKGSFMEKLA
SLQASATITDTKTAAKNDAKYEKIVCTTSTLDEPVVWPHQKLDFLQPNNIKDKQGRRPDH
PDYDPTTLYVPEKYLNSLSPGVRQWWILKSDNYDCVLFFKVGKFYELYHMDAEIGVQELG
FVYMRGEFAHSGSPEVSFDKMSSILVDRGYKVARVEQTETTDMMSERCKKTKATKFDKVV
RREICQISNRGTQVFGTQCQITPHHQPNYMLAVVEKNESSCSKYGVCYVDTSIGDFYIGE
FEDDKNGSRLLTLLSHHMPVLLLYERGSLSERTQEIFRTMLSAILKDPLPANGSKVCSAE
KTLKHFAENYYAKMSDDKNSADNWPLALRTMQSESDHLGLTPRDDCKLALKALGQCVMYL
KRCQLEEKVLPMARYHLYTPPDMLNESTKAGKPQLAQQQTARRRHMVIDATTLANLRITG
EEYSLQATLDNCCTKFGKRLLHHWICSPSCELDVIVERQQAITELVKHAMVLQDLRALLA
PMPDFERHLAQIHLFGNKRISEGHPDGRAILFEEKLYNKKKIQNFIGILKGFTALMEIPT
LLGGFESPLMKRLTQLQPTGVFPDMAEQLEFFKNAFDHETGAKTGVIAPEQGVDADYDEV
LEKINSINATFKDYLTEQEKFFGCRLTPGGEKNRFQLEVPENAARKAGKAYQLEGQRKGN
KPVRRFSTNETRSLVKQLQNAELERDAILKDLARRIFEKFSNHYELWKQCCDCVANLDVL
ASLTEYARGQQVICVPELQEQNADQQPFVDIAEGYHPCAPVDTFIPNGITLGTGETPAPL
SILTGPNMGGKSTLMRQVGLLVVMAQIGAHVPAAHCRMSLVDRIFTRLGAQDDIMAGQST
FLVELNETSLILKHATVNSLVLLDELGRGTATYDGTAIAASVVNYLADLKSRTLFSTHYH
NLIEYFHKDTRITLGHMACMVENEDTEDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMP
QPIIKRAYELSKRVEAIALRRKILSKVVAGAGNKCSDLKEMRNLLLQLKSCRV
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaattaaataaaagtggtagtgctggtggtagcagtacgccgagtaatacc
ctttttaagtatttttcgcgctcgccggctacagcagaaaagaagaaaattcctagaata
cccagtgaggaagattcaaaaaatttaagcaaagatgtgagaaaggagaacttggagaat
gggcgcagttttgatgaagaaccttcagctaagcgaaaacttgagatagacctcaaccat
tctcggagtaataaaatggatttagatgatgatgaggatgaggatattaccattaaacgt
tccaagaataaaagacaacgcatattcgattctgatgatgaagaaggcattaaaccaaca
gtaaaagcaaaaaaggaagatgatgataaagctgattataagccaagtgatgaggatgac
gaagatagtagtgacgaccaagacgtgtcggtaacaaaagacacattttcgaaaaaaagt
gatgaacctaaacaaaaaaaacctaaattagaaaagggcagttttatggaaaagttggcg
tcattgcaagcctcagcaactataacagacacgaagactgctgcaaagaatgatgctaaa
tatgagaagattgtgtgcaccacttccacattagatgagcctgtagtttggccacaccaa
aagctcgatttcttgcagcccaacaatataaaagacaagcaaggcaggcgccctgatcat
ccagactatgatcccacaacactctatgtacctgagaagtacttgaattcgttatcgccg
ggtgtacgccaatggtggatattaaaatctgataactatgactgtgtgctcttctttaaa
gttggcaaattctatgagctatatcacatggacgcagaaataggtgtacaggagctggga
tttgtatatatgcgcggagaattcgcgcattccggttcgccagaagtgagttttgacaag
atgtctagtatactggtcgaccgtggttacaaggtggcgcgcgttgagcaaactgaaacc
acggacatgatgagcgagcgttgcaaaaagacaaaagccacaaagttcgacaaggtagta
cgtcgtgagatttgtcagatatccaatcgtggcacccaggtattcggcacacaatgtcag
ataacgccacatcatcagccaaattatatgttagctgtggttgaaaagaacgagtccagt
tgtagtaaatatggagtttgctatgtggatacatcgatcggtgacttttatattggcgaa
tttgaggatgacaaaaatggttcgcgtctgttaactttgctttcgcatcacatgccagtc
ttgcttctttatgagcgcggctcgctttccgagcgtacacaagagatcttccgtacaatg
ctttcagctatactcaaagatcccttgcctgccaatggctctaaagtgtgcagcgcagag
aagacgctgaaacacttcgccgaaaattattacgcaaaaatgtcagacgacaaaaatagt
gctgacaattggccattggcgttgcgtacgatgcaatctgaatctgaccatttaggttta
acgccacgagatgactgcaagttagcattgaaggcactggggcaatgcgttatgtattta
aagcgttgtcaacttgaggaaaaggtgctaccaatggcacgttatcacctttacacgcca
ccagacatgttaaatgagtcgacgaaagctggaaagccgcagttggctcagcaacagacg
gcacgtcgccgccacatggttatcgatgcgaccacccttgctaatctgcgcatcaccggg
gaagagtattcgttacaagccacgctggataattgctgtacaaaattcggcaaacgtttg
cttcaccattggatttgctcgcccagctgcgagttagatgtgattgtggaacgacagcaa
gctattactgaattggttaaacatgccatggtgttgcaggacttacgcgctttattggcg
ccaatgcctgattttgaaagacatctggcgcagatacatttgttcggcaataagcgtatc
tcagaaggtcatccagatgggcgtgccattcttttcgaagaaaagttatataataagaaa
aaaatacaaaattttatcggcatactaaagggttttactgcccttatggagataccaacg
ctcttaggaggatttgaatcaccactcatgaagcgtttaacacagttgcagccaaccggc
gtctttccggatatggcagaacaattagaatttttcaagaatgcctttgaccatgaaaca
ggtgcaaagaccggcgtaattgcacccgagcagggtgtggatgcagattacgatgaggta
ttggagaaaatcaatagcataaacgctacatttaaagactacctcactgagcaagagaaa
ttctttgggtgccgtcttacacctggtggcgagaaaaatcgcttccagttggaggtgcca
gaaaatgcagctaggaaggcgggcaaagcctaccaattggaaggtcagagaaaaggtaac
aagccagtgcgacgtttctcgacaaatgaaacacggtcacttgtaaagcaattgcaaaac
gctgagctggaacgtgatgccatactaaaagatttagcaagacgtatatttgagaaattc
tccaatcactatgaactctggaagcaatgttgtgattgtgtggcaaatcttgatgtctta
gcctcgttaacagagtacgcacgcgggcagcaagtaatctgtgtgccagaattgcaagag
caaaatgccgaccagcagccattcgttgacattgcagaaggctatcatccgtgcgcacct
gttgacacattcataccaaatggcatcactctaggcacaggtgaaacaccagcaccactc
tcaatacttacaggacctaatatgggtggcaagagtacgctaatgcggcaagttggctta
ctggtggtgatggcacaaattggcgctcatgtgccagcagcacattgccgcatgtcactt
gtcgatcgtatctttacgcgcttgggtgcacaagatgatatcatggctggccagagcaca
ttcctagtggaattaaatgagacctcactgattttgaagcatgctactgtcaacagccta
gtgctgctggacgagctgggtcgcggtactgccacctatgatggcactgctatagcagcg
tcggtagtcaactatcttgctgacttgaagagtcgtacacttttctccacacactaccac
aatcttatcgaatacttccataaagatacgcgcatcacattgggccatatggcttgcatg
gtagaaaatgaggatactgaagatccgactcaagaaacggtaactttcctatataagtat
acggccggtgcttgccccaagtcgtatggcttcaatgcggctaaactggctggcatgccg
cagccaattataaaacgtgcctatgagctttctaaacgcgtagaggctatcgctttgagg
cgcaagattttatctaaagtcgttgctggtgctggcaataaatgcagtgatttaaaggag
atgagaaatttacttttgcagctaaagagctgtcgtgtttaa
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