Anastrepha obliqua (West Indian fruit fly): 129242844
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Entry
129242844 CDS
T09777
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03022
Basal transcription factors
aoq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129242844
09124 Replication and repair
03420 Nucleotide excision repair
129242844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoq03021
]
129242844
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129242844
Transcription machinery [BR:
aoq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129242844
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129242844
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
129242844
NCBI-ProteinID:
XP_054735691
LinkDB
All DBs
Position
3:100084059..100085914
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AA seq
491 aa
AA seq
DB search
MSDTKAGRSGPTTSTYALIPKPANLQCMDLQEYLRTRAPDTLEKLYNYPTICLAVYRELP
EIARQFVIRILFVEQPVPQAVVASWGSQHYAKEQAASAACLSELNVWRVTAIPGGLSAWE
LSPTFKKNLKIALLGGGKPWSMSHTLEKDSKPRDIAFLDTYAMARWRCVLHYMVGTGSST
KAQDSEGISPDAVRILLHANLMKRDERDGITITRQGFQFLLLDTQTQVWHFMLQYLDTCE
ERGLSLPECLSMLFQLSFSTLGRDYSSEGMSPKMLTFLQHLREFGLVFQRKRKEGRFYPT
RLALNVTNKHAAVPAIVSEEDKVQESGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRF
PNLVVGVLTRDSVRQALRGGITADQIVSYLEQYSHPNMKLTESAIKTKSPLPPTVVDQIK
LWELERNRFTYTEGVVYNQFLSQADFVTLRDYAQSINVLVHMNERTRTMVVTKNGHDDVK
RFWKRYSKSGG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatacaaaagctggccggtccggtccgactacgtccacatatgcgcttatacca
aagccggctaatttacagtgtatggatctgcaggagtatctgcgtacgagagccccagat
actctcgaaaaattgtataactatccaacaatttgtttggcggtgtatagagaattgcca
gaaatcgctcgccaatttgtgatacgcatacttttcgtcgaacaaccagtgcctcaagcc
gtcgtcgcatcgtggggatcgcagcattatgcaaaggaacaagctgcttctgcggcttgc
ctcagtgagctcaacgtttggcgcgtgactgctataccgggtggcctgtctgcctgggag
cttagtccaacattcaaaaagaatttgaaaattgctttgttgggaggcggtaaaccctgg
tctatgtcgcatacgctggaaaaggattctaaaccgcgtgatattgctttcctcgacact
tacgccatggcccgttggcgctgtgtacttcactacatggtgggcaccggcagctcaacc
aaagcgcaagacagtgaaggtatcagcccagacgcagtgcgtattctgcttcacgctaat
ctcatgaagcgagacgaacgtgatggaattacaattacacgacaaggctttcagtttctt
ttacttgatactcagacgcaggtgtggcatttcatgctgcagtatttggacacttgcgag
gaacgtggtctatcgttgcctgaatgcctctctatgttgtttcaactaagcttctcaacg
ctaggccgcgactacagctcggaaggcatgagcccgaaaatgctcacgtttttgcaacat
ctgcgagagttcggactcgtatttcaacgaaaacgaaaagaaggacggttttatccaaca
cgtctagcactgaatgtaacaaataagcatgcggcagtgcctgccattgtaagcgaggaa
gataaggtgcaggagagtggttatattgtggtggagacaaattatcgcgtgtatgcatac
acagactcgcccttgcaggttgcagtgttaggtttgtttacagaactattgtaccggttt
cctaacttggtagtcggtgtgttgacacgcgactccgttcgccaagcgctgcgcggcggc
attactgcggatcaaattgttagctatttggagcaatattcgcatcccaacatgaaattg
accgaatcggcaattaagacaaagtctccacttccgccgactgttgtcgatcaaattaag
ctatgggagctggaacgtaatcgtttcacctacacagaaggtgtggtctacaatcagttc
ttgtcacaggcggactttgttacgctacgtgactatgctcaatcaattaacgtgctggta
cacatgaatgaacgaacgcgtacaatggtggtcaccaaaaatgggcatgacgatgttaaa
cgattctggaaacgttactcaaagagtggtggatag
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