Anastrepha obliqua (West Indian fruit fly): 129242951
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Entry
129242951 CDS
T09777
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03022
Basal transcription factors
aoq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129242951
09124 Replication and repair
03420 Nucleotide excision repair
129242951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoq03021
]
129242951
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129242951
Enzymes [BR:
aoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
129242951
Transcription machinery [BR:
aoq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129242951
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129242951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
TniB
Motif
Other DBs
NCBI-GeneID:
129242951
NCBI-ProteinID:
XP_054735894
LinkDB
All DBs
Position
3:complement(2100052..2103256)
Genome browser
AA seq
813 aa
AA seq
DB search
MGPPKKSRKDRFTGDKFGKKRRAEDEAFTQLVEDGDSVASDGAAELDGVPVAASKNVETN
DDGIMTDEYGAKDYRAQMELKSDHGNRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPV
CRPEHIHEYKLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPEGIIEFIKLCTLSYGKVK
LVLKHNRYFIESPHPEILQKLLKDPVIQQCRLKREEGDGFIQGTLEGKAITQFGTKLPTG
TDKTSTGLNTASDPSSGSATGAVVSNNPDGTTAVPEDITNFYDKIDNEEEDEDEANLKTV
SFEVNQEKIEVIQKRCIEIEHPLLAEYDFRNDTHNPDINIDLKPAAVLRPYQEKSLRKMF
GNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSM
ICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPA
KMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCA
EVWCPMSPEFYREYLTTKTSKKMLLYVMNPSKFRSCQFLIKYHEKRGDKTIVFSDNVFAL
KHYAIKMNKPFIYGPTSQNERIQILQNFKFNQKVNTIFVSKVADTSFDLPEANVLIQISS
HGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYK
VITHLSGMDTDSDLMYKTREEQSQLLQQVLSASDLDCEDEKVPGEPGYRPSGAAASKRAG
GLSSMSGGDDAIYYEQRRRNAGTVHPLFKKFRA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgggtccgccgaagaaatccaggaaagatcgcttcacgggtgataaatttggaaagaaa
cgtcgtgcagaagatgaagcatttacacagctagtagaagatggagattccgtcgcttct
gatggtgccgctgagttggatggggtgcccgtggctgcatctaaaaatgtggaaactaac
gatgacggtattatgacagacgaatatggggccaaggattaccgggcccaaatggagctt
aagtctgatcatgggaatcgtcccttgtgggttgccccaaatggacatattttcttggaa
tccttttctcctgtttataaacatgcacatgatttcttaattgctatatcggagcctgta
tgtcgcccagaacacatacacgaatataagttaacagcttacagtctctatgcagccgtt
tctgtgggattacagacacacgatatcattgaatatctcaaacgtttaagtaaaacttca
atacccgagggaattattgaatttattaagctatgcacattgtcctatggaaaagtaaaa
ttggtgctaaaacataacaggtattttattgaatcaccacatcctgaaatacttcaaaaa
cttcttaaggatcctgtgattcaacaatgtcgtttgaaacgtgaggaaggagatggtttc
attcagggcacattagaaggcaaagcaattactcaatttggaacaaaattaccaactggt
actgacaaaacatccacaggattgaatactgctagtgacccatcgtctgggtctgcaaca
ggagccgtagtatccaacaacccagatggcaccacggcagtcccagaagatataacaaac
ttctatgataaaatcgacaatgaagaggaagatgaggacgaagcaaacttaaaaacagta
tcattcgaagtgaatcaagaaaaaattgaggttatacaaaaacgttgcattgaaatcgaa
catccgttactggcggaatatgactttcgaaatgatactcataatccggacataaatatt
gatttgaaaccagctgcggttcttcgaccttaccaggaaaagagtttgcgaaaaatgttt
ggcaatggtcgcgcccgatccggagtgattgttttgccttgtggagctggcaaatcactt
gttggtgtgacagcctgttgtaccgtacgaaaacgcgctctagtgctttgcaacagtgga
gtttctgtagagcaatggaaacaacagttcaaaatgtggtctacggcggacgatagcatg
atttgtcggtttacgtctgaagccaaagataaacccatgggatgtggtatcctcgttaca
acttattcaatgattacgcatactcaaaagcgatcctgggaggctgagcaaactatgcgc
tggttgcaggaacaggaatggggcataatggtgctggatgaagtacacaccatacccgct
aaaatgtttagacgcgtcttgactattgtacagtcccattgtaaattaggtttgacagcc
accctactgcgcgaagatgataaaatcgcggatctgaattttctaattgggccgaagctt
tatgaagcgaattggctggaattgcaaaagaagggatatattgcaagggtacaatgtgct
gaggtatggtgtcctatgtctccagaattttaccgcgaatatcttactacaaaaacatca
aagaagatgcttttgtatgtgatgaatccatccaaatttcgcagttgccagtttctaata
aaatatcatgagaagcgaggtgacaaaacaattgttttctcggataacgttttcgctctc
aaacattatgctataaagatgaataagccgttcatttatggaccaacttcgcaaaatgag
agaattcagattctacagaactttaaattcaatcaaaaggtcaacacaatatttgtgtcc
aaagtcgcagataccagttttgatttgcctgaggcaaacgtactcattcagatatcctca
catggcgggtctcgacgccaagaagctcagcgtttaggtcgcatattgcgagcgaaaaag
ggtgctattgctgaagaatacaatgcattcttttatactctcgtttcacaagatactatg
gaaatgagttattcacgcaaacgccaaaggtttttggttaatcaaggttatagctataaa
gtaattacccacttaagtggcatggacaccgattctgatctgatgtataaaactcgcgaa
gagcaatcacagctcttgcagcaagtcctctcggcctcggatttggactgcgaagatgaa
aaggtaccgggtgagccgggctatcgaccaagtggtgcagcagcttctaaacgtgctggc
ggcctcagctcaatgtctggcggcgatgatgctatttactatgagcagcgccgtcgaaat
gcgggcactgtacatcctttatttaagaaatttcgagcataa
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