Anastrepha obliqua (West Indian fruit fly): 129243920
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Entry
129243920 CDS
T09777
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03440
Homologous recombination
aoq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129243920
03450 Non-homologous end-joining
129243920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoq03032
]
129243920
03400 DNA repair and recombination proteins [BR:
aoq03400
]
129243920
DNA replication proteins [BR:
aoq03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129243920
DNA repair and recombination proteins [BR:
aoq03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129243920
BRCA1-C complex
129243920
NHEJ (non-homologous end-joining)
MRX complex
129243920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
YdjO
ABC_tran
AAA_22
AAA_16
Phage_TAC_18
Motif
Other DBs
NCBI-GeneID:
129243920
NCBI-ProteinID:
XP_054737346
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All DBs
Position
4:complement(102908235..102915576)
Genome browser
AA seq
1308 aa
AA seq
DB search
MSIIEKLSIQGIRSFGSNSEDVQTITFSSPVTLILGENGCGKTTVIECLKYGLTGEVPPG
SDRGRSFVHDPKIFNQAGTLGQVKLEVSNLQGKRISVCRSMKISNKRGKYSFETLDATMN
YIDSKSDGKGSTNSISKRCVDVDVAMCQFMGVSKAIINNVLFCHQEDSSWPLDESKKLKE
KFDAIFGMTEFNKTIERIIKMRKEEADNLKVKEADLRLLAHLKQEMDDKSLTLKKAQEKC
AAIQQECELCEEEMKPIDARLLEIRNVEYEVGKYQAQKVEIETEQKNCQEQILALNSNIK
VPFEGSREELEQEISDFGQKMLEKKRRRNVLDKKLNDSKVEEKTLQKRFTDLDKRRILLM
QQCQKEQECVSKRAEQLKTLCQHLEITLTEDLEFQPECVAGVLERVKHSLMDKERIISES
VAQTDEEDRGRQAGIDCQRVELTKVEEGIITHEKQKKVNEKELETITKEIAEIETSARRI
KTLSKNIDSLIKLMDEMNGKCNQETMRADIAENKARIVKLQEQFRELDARLTKLNMMAKL
IAEITLKQKELEKKEQDARRVKGKHADNFKKLFSRTVESNYKRAMQICSEKLRDSIKELS
GKSNKLQLEQQSFEIKRKNLKAELLKLEKELEEAKEKVYEACHAASYEDTLAKSKAAMAK
YQLEHGALLSAEAMYKRYIEKVTEEPCCPLCHKDMTSTEATDITMELSDEINRLPENIKR
TEKLLKAEQKKYENLLHIKSVVETVAKLELDIPKKKKELASIEEKLAKCVEDTESLQMLL
SEPTTSLELADSMMGDVSLLDEAMKEVTRLKNDIEQLNAKLPPDFESDANLDDLQMLKSG
ISEELDAERHTLEEKQANLEKIVSAINKMQEQKNSYQDERIKLQEGQQSLAQLQERQTEL
KNLIESGTTEIKQLKTKLPALKQKLNALIAEKNRILETSRKRVAKMQTELNSYKKIDHDI
QRLNDEVFEFQSLNLATEIADMKESIKTCKVAVEAKAEEIAKTSNELEVIKTECLQQETL
ERDLRDNREMKILQEKKAGIDVRVEALAKQLGKMDFPKLSQEKNSLIKKREKGTVHKGEL
LGKIGEVKNQIKKLESEINEPKFKDSLENYRRAFYEVKTSQQLKEDLGQSKISLEWSLMK
FHKEKMERINRLIREYWRLIYRGNDIDYIQIQTDEVDLNANADRRRNYNYRVVQSKNSSE
IEMRGRCSAGQRVLASLIIRMALAETFSSNCGVLALDEPTTNLDRNNILSLCEALNRIVD
ERRMQSNFMLIIITHDDDFISTLGKINTYHRVFRNDECKSVIRKVKVS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtccattatagaaaaattatcgatccagggtattcgtagttttggttcaaattcggaa
gatgttcagacaataactttttcttcaccggtgacattgatattgggagagaatggttgc
ggtaaaaccactgtgattgagtgcctcaaatatgggctcactggggaggtgccgcctggc
agtgaccgcggtcgaagctttgtacacgatccgaaaatattcaatcaagcaggcacattg
gggcaagttaaattggaagttagcaacctacaaggaaaacgaatatccgtttgtcgttct
atgaagatatcaaataagcggggcaagtattcatttgaaacgctggatgcgactatgaac
tatatagacagtaagagcgatggcaagggctctacgaactccattagtaagcgttgtgtg
gatgtcgatgtggctatgtgtcagtttatgggagtgtcgaaggctattattaacaatgtg
ttattctgccaccaagaggattcaagttggcccttggacgaatctaaaaagttgaaggag
aagttcgatgctattttcggtatgacagagtttaataaaaccattgagaggatcataaaa
atgcgtaaagaggaggctgacaatttaaaagtgaaagaggcggacttacgccttcttgca
cacttgaaacaagaaatggatgataagtcactgactttaaaaaaggcacaagagaagtgt
gcagccatacagcaggagtgtgagctttgtgaggaggaaatgaagccaattgatgcgcgt
ttgctggaaattcgcaacgttgagtatgaagtggggaagtatcaggcgcaaaaagtagag
atagaaactgaacaaaagaattgccaggaacagatattggctttgaacagcaatataaaa
gtgccatttgaaggtagtcgagaggaattagagcaggaaatttctgacttcggtcagaaa
atgcttgagaaaaagcggcggcgcaatgttctagataaaaaattgaacgattcaaaagta
gaagaaaaaacactacaaaagcgtttcactgatttggataaaagacgcatattgctaatg
cagcagtgtcaaaaggaacaagaatgcgtttcgaaacgcgccgaacaattgaaaacactt
tgccaacatttagaaattacgcttaccgaagatctagaatttcagcctgagtgtgtggca
ggtgtgttggagagagttaagcactcattgatggataaagagcgtattataagcgagagt
gttgcccaaacggatgaagaggatcgtggcaggcaagcaggaatagattgccaacgcgtt
gagctcactaaagtggaagagggaatcataacgcatgaaaagcaaaaaaaggtcaatgaa
aaggaattggaaactatcacgaaagagattgctgaaatagagacttctgcgcggcgcatc
aaaactctgtctaaaaacatagatagtctgattaaactgatggacgaaatgaacggtaaa
tgcaatcaagagacgatgagagctgatatagctgaaaataaagcgagaattgtaaagttg
caagaacaatttcgtgaattagacgcacgactaaccaagttgaatatgatggccaaatta
attgccgaaatcacgttgaaacaaaaagagttggagaagaaagaacaggatgcacgccgt
gtaaaaggcaagcatgcagataactttaagaaactctttagccgcaccgtcgagtctaac
tacaagcgagctatgcaaatatgcagcgagaaattgcgcgactctatcaaggaacttagt
ggaaagtcaaacaaattgcagttggaacaacagtcgtttgagataaagcgtaaaaattta
aaagctgaactccttaaactggaaaaggaactcgaagaagcaaaagagaaggtttacgag
gcatgccatgcagcatcatatgaggatacgttggccaaaagtaaagccgccatggcaaaa
tatcagttggaacacggggcgttactgtcagcggaggctatgtacaaaagatatatagaa
aaagttacagaagagccttgttgtccgttgtgccataaggacatgaccagcactgaggcc
actgatatcacaatggagctatctgatgagatcaatcgcctgccggagaacataaaacgc
actgaaaagctattaaaagcagagcaaaagaagtatgaaaatctgttgcacattaaatcg
gtagtagagacggtggctaaattggaattagacatcccaaagaagaagaaagaactcgcc
agcattgaagagaagctagccaagtgcgtagaagacactgaatcactccaaatgctctta
tctgaaccgactacatcattggagttggctgactcgatgatgggtgatgtatcactgctg
gatgaggccatgaaagaggttacgcgtctgaaaaatgatattgagcaattgaatgcaaag
ctacctcctgattttgagtctgacgctaacttagacgatctacaaatgctaaagtctggt
atatctgaggagcttgatgcagagcgtcataccttggaggagaagcaagcgaatcttgaa
aagattgtgagtgcaattaacaagatgcaagaacaaaaaaattcctatcaagatgaacgt
ataaaactccaggaaggacagcaatcgttggcgcagctacaagaacgccagacagaattg
aaaaatttaatcgaaagcggaactacggaaattaaacaattaaaaactaaattgcctgct
ttgaagcaaaagctaaatgctctaattgctgagaagaatcgcattctggagacgtcgcgt
aagcgtgtggccaaaatgcaaaccgagttaaattcctacaagaaaatcgaccacgatata
cagcgactaaatgacgaagtgtttgaatttcaatcgttaaatctggcaaccgaaatcgcc
gatatgaaagagtcaattaaaacatgcaaagtggcggtcgaagcaaaggcagaagaaatt
gccaaaacatcaaatgagcttgaggtgatcaaaacagaatgcctgcagcaggagactctg
gaacgcgatctgagagataatcgtgaaatgaaaatactgcaggagaaaaaggccggcatt
gatgtgcgagttgaagcattggccaagcaactggggaaaatggatttccccaaactgtcg
caggaaaagaattctctgattaaaaaacgcgaaaagggtactgtacataagggtgaatta
ctcggcaaaattggcgaagttaagaatcaaatcaagaaattagaaagcgagataaatgaa
ccgaaattcaaggattcgctcgaaaattatcgtcgcgctttctacgaagttaagacttca
caacaattgaaagaggatcttggccagagtaagataagcttggaatggtctctcatgaaa
tttcataaggagaaaatggaacgtattaatcgtctcatacgtgagtattggcgtttaatt
tatcgcggcaacgacattgactacatacaaatacaaaccgatgaagttgatttgaacgcg
aatgccgatcgtcggcgcaattataattatcgtgtggtgcagtcgaaaaatagttcggag
attgaaatgcgcggccgttgtagtgccggtcaacgtgtgttggcctcgttaattatacgc
atggcgttggccgagacattcagcagcaattgcggtgtgctggctttggatgagccgacc
accaatttggatcgtaataatattttgtcgttgtgtgaggcattgaatcgcatcgtagac
gaaaggcgcatgcaatccaattttatgttgatcataattacgcatgacgacgatttcatc
tccaccttgggaaagataaacacctatcatagagtgtttcgcaatgatgaatgcaaatcg
gttatacgtaaagtaaaggtgtcttaa
DBGET
integrated database retrieval system
