Anastrepha obliqua (West Indian fruit fly): 129244393
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Entry
129244393 CDS
T09777
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq04512
ECM-receptor interaction
aoq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129244393
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129244393
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoq00536
]
129244393
Glycosaminoglycan binding proteins [BR:
aoq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129244393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
129244393
NCBI-ProteinID:
XP_054737989
LinkDB
All DBs
Position
4:121398413..121409801
Genome browser
AA seq
1549 aa
AA seq
DB search
MRFKPLHLLCLACVLCVLLECAWAENSAGAHVGKRKTRTKKVKKYRKAFNERPQAEEPQP
EADLPGTDEFEAYDYNNYEDVDVDADVNVGGTNGFDTHQEASNPSNMPNVEAPANVVGAF
SCLYEGNWYRDGDEFTSERNGCTNSCSCTEGKVICRETENCMHIPPATSTTTTTTTTEPN
LPATAEDNPYAGVSTGPRGLPGYPGAQGRPGEGGIPGTPGNPGVPGNPGVPGPIPDMSYY
HQQLAAEYANSDKGPSSLPFVPEFQYLQSSVGAVGPRGAPGSSGPVGPQGFQGMRGEPGE
PGPQGPPGLMGPRGLPGPPGKDGSPGEDGEPGLQGAAGIPGPRGLPGMPGIPGLKGHHGL
PGIDGAKGELGAPGEKGGTGPMGAVGPTGPQGPAGPRGERGREGPPGPQGARGLDGNPGA
AGQPGSIGKPGPPGFPGSPGAKGDWGHPGPKGDQGLQGPRGEAGRPGAAGEPGMSGPPGK
DGLHGDKGSMGAPGIAGPQGFPGPRGPDGIPGSPGEPGIKGTPGQPGERGYKGDQGIKGE
SGQSGPRGLPGTVGPEGKRGKRGMRGPTGPSGPTGERGPQGLPGISGPDGPIGPKGTPGD
RGIQGPHGIKGSPGDVGQPGIPGVQGLRGLPGRIGPPGKPGPVGERGIPGADGRPGEQGL
QGLQGLPGPMGIPGDKGFTGEPGKNGEPGPPGPQGPHGDSGKDGLPGAQGPRGPPGQDGE
RGESGTAGPRGFQGLPGAAGNPGAPGKDGSAGPPGPQGLVGPSGLRGERGYPGERGPVGQ
PGTPGERGEPGAPGHDGPPGLPGKLGSKGHMGAPGMLGLPGPRGLSGLPGEKGERGSIGP
FGPEGPPGRPGDRGPQGIVGPPGAPGESGERGEPGSPGQPGEQGAAGGPGERGPIGLQGP
PGYPGAPGLAGLPGAKGDRGLMGIKGEQGMLGPHGPPGEQGLQGPVGLSGLKGARGEPGL
RGEPGLSGLPGRPGDQGQPGQTGSQGLPGVAGFPGAKGNPGEPGRPGNPGSQGLQGATGL
EGQKGETGSDGPPGPAGNPGPPGNVGERGMPGLPGPPGAAGLRGLRGVPGEAGPQGRPGK
DGAPGAQGLQGPQGLPGPMGESGPEGPPGKAGPPGIAGRVGDKGPQGQVGNPGPPGNPGL
PGPPGAMGPVGLQGERGPKGDLGLPGVEGPQGLRGKSGPPGVEGPKGEHGEPGPKGIKGH
RGLIGLQGMPGQAGLKGDSGPPGIPGQPGKSGEMGMRGPQGRDGNPGPMGPPGQPGPRGL
SGGEGKPGPMGPAGPPGPPGSPGESVGYDVAALTALLNQGQTKGIDFQSDQPNLLPEGLS
DDEKEAMVIKAFEHLKASFERLRRPNGQQSAPAKTCRDLFAAYPDYKSGEYWIDPNEADP
RDAILVYCERETRGSCILPKPQETPVLSYKGAERETWLSEMPGGMKITYKTDSHQLGFLQ
LLSAKASQRITFNCRNTIGYLDEDKTNDRNGLKLLSWNDAELTPKGPLRLRFEAESDECR
HRSNSWAKTVITYKTEKPQRLPIVDVKIRDVGEANQQFRIELGPVCFYN
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgagattcaagcctttacatctcctatgcctcgcatgcgttctgtgcgttttgcttgag
tgtgcttgggcggagaactctgctggagcgcatgtaggaaagcgaaaaacacgtactaaa
aaagtgaaaaaataccgtaaagcatttaatgagcgaccgcaagcagaggagccgcaaccg
gaagccgatttaccgggcacagatgagttcgaagcatacgattacaacaactacgaagat
gtcgacgtggatgccgacgtgaatgtaggcggcactaacggtttcgatacccatcaggaa
gcaagcaacccgtcgaatatgccaaatgttgaagcccccgccaacgttgtgggtgctttt
tcatgtctgtatgagggtaattggtatcgcgatggtgatgaatttaccagcgagcgcaat
ggctgcacaaattcttgttcttgcactgaaggcaaggtgatctgtcgcgagactgaaaat
tgcatgcacatcccaccagcaacttccaccacaacaactaccacgacgacagagcctaat
ctcccagctaccgctgaagacaatccttatgctggcgtttccactggcccacgcggttta
cctggttatccgggtgcacaaggtcgtccgggagagggtggtatacctggtacacctggt
aatccaggtgtgcctggaaatcctggcgtgcctggcccgataccggatatgagttattat
caccaacagttggccgctgagtatgcaaattcggataagggtccgagttcgttaccattc
gttccggagtttcagtatctgcaatcatctgtgggagctgtcggtccacgtggtgcacct
ggtagctcaggtcctgttggccctcaaggttttcaaggcatgcgtggtgaacctggcgag
cctggaccacaaggtccacctggtttgatgggaccacgcggtttacctggtccaccaggt
aaagatggttctcctggtgaggatggtgaacctggattgcaaggtgctgcaggtatacca
gggccacgaggcttacccggtatgccgggtattcccggtttgaaggggcatcatggcttg
cctggtattgatggcgcaaaaggtgagctaggtgctcctggtgagaaaggtggcactggc
ccaatgggtgctgttggccctacaggcccacagggccctgctggtcctcgtggggagcgt
gggcgtgaagggccaccgggtccacagggcgccagaggattagatggtaatccgggtgct
gcagggcaacctggttctattggcaagcctggcccaccaggtttccctggtagtccaggt
gccaaaggcgattggggacatccaggaccaaaaggtgatcaaggattgcagggtccacgc
ggtgaggctggacgtccaggcgctgccggcgagcctggcatgtcaggaccgcctggtaaa
gatggtttacatggtgacaaaggttcgatgggtgcacctggtattgcagggccgcaaggt
tttcctggaccccgtggtccggatggcatacctggcagtccaggagaacctggtataaaa
ggcacaccagggcaacctggcgaacgtggttataaaggcgatcaaggtattaaaggagaa
tctggtcaatcaggtccgcgtggcttaccaggtacggtagggccggaaggaaaacgtggt
aaacgcggtatgcgaggacctaccggaccttcaggcccaactggcgaaagaggaccgcaa
ggattgcctggaatttctggtccagatggtcctattggtccaaaaggtactcccggcgac
cgcggcatacaaggaccacacggcataaagggaagtccaggcgatgttggacaacccggt
ataccaggagttcaaggtttgcgtggtttgccaggacgtataggacctccaggaaaacct
ggacctgtgggtgagaggggaattcctggcgccgatggaaggcccggtgaacaaggtctg
caaggattgcagggactacctggaccaatgggcattcctggcgataaaggcttcaccgga
gaacctggcaaaaatggtgagccaggtccaccgggtcctcaagggccccatggagatagc
ggtaaagatggtttgcctggcgcacaaggcccccgtggtcctcctggtcaagatggggag
cgtggagagtcaggcactgctgggcccagaggtttccaaggtctacctggcgccgctggt
aatccaggcgctccaggaaaagatggatctgccggaccacctggcccacaaggtcttgtt
ggcccttctggattacgtggtgaacgtggttaccctggtgaaagaggtccagtaggtcag
cctggaacacctggagagcgtggagaacctggtgcgccagggcatgacggaccaccaggt
ttacctggaaaactaggatctaaaggacatatgggagcgccgggaatgttgggattgcct
ggtccgagaggactttctgggttgccaggagaaaaaggtgagcgtggtagcataggacca
tttggtccggagggtccaccaggccgtccaggcgatcgtggcccacaaggaattgtagga
ccacctggagcacccggtgaatcaggagaaaggggtgagcctggaagccctgggcaacca
ggtgagcaaggagcagcaggtggccctggtgaaagaggaccaattggtttgcagggccca
ccaggttatcctggagccccaggcttggcaggattacccggagcaaaaggcgatcgtggt
ttaatgggtatcaaaggcgaacaaggcatgctaggacctcatggtccccccggtgagcag
ggtttgcaaggtcccgtgggcttaagtggtttgaaaggtgctcgaggtgaaccaggactc
aggggagaaccaggattaagcggattgcctggcagacccggtgatcagggtcaacccgga
caaaccggaagccaagggttacctggcgtggctggattcccaggagctaagggaaatcct
ggggaacccggtagaccaggaaatccaggatctcaaggtttgcaaggtgcaactggtttg
gagggacaaaaaggtgaaacaggcagtgatggacctcctgggccagcgggtaatccagga
ccaccgggtaatgttggtgaacgcggaatgccaggcttgcctggtccaccaggcgcggca
ggtttgcgtggcttaagaggagttccaggtgaagcaggtccacaaggtagacccggaaag
gatggtgcaccgggagcgcaaggcctgcaaggaccacaaggcctaccgggcccaatgggt
gagtctggacctgaaggaccacctggtaaagctggacctcctggaattgctggtcgtgtt
ggtgataaaggacctcagggacaagtaggaaatcctggaccaccgggaaatcctggtctg
cccggtccacctggtgccatggggccggtaggtttacaaggtgagcgtggaccaaagggt
gatcttggtttaccaggtgttgaaggaccacaaggcctgcgtggcaaatctggcccacca
ggtgttgaaggaccaaagggtgaacatggtgagcctggtcctaaaggtatcaagggtcat
cgcggtcttatcggtttacagggcatgcccggccaagcaggtcttaaaggtgactcaggt
ccaccaggcatacccggtcagccgggaaagtcaggagagatgggaatgcgtggtccacaa
ggccgcgatggcaacccagggcctatgggcccgccaggtcaacctggtccacgtggctta
agcggcggtgagggtaaacctggacccatgggacccgccggtcccccaggaccaccaggc
tcacctggagaatcggtcggatacgatgtagctgcacttactgctttactcaatcaaggc
caaacaaaaggcatcgacttccaaagtgaccaaccgaatctcctaccagaaggactttcc
gatgacgaaaaggaagcgatggtaatcaaggcgttcgaacacttgaaggcatcttttgag
agattacgaagacccaacggtcagcaatcggcaccagccaaaacgtgtcgcgatcttttc
gcggcctatcctgactacaaatctggcgaatactggatcgatccaaatgaagctgatcca
cgtgacgctatcttggtgtattgtgagcgtgagacgcgcggttcgtgcatactaccgaag
ccacaagaaacgccagtgttaagctacaaaggcgctgagagggaaacgtggctgagtgaa
atgcctggaggtatgaaaatcacctacaaaaccgattcgcatcagttgggcttcctgcaa
ttgctttccgctaaggcctcacaaagaatcactttcaattgtcgaaatacaattggctat
ttagatgaagacaaaacgaacgatcgaaatggcctaaagctgttgtcatggaatgatgca
gaattaacgccaaagggaccgctgcgtctgcgctttgaagcagaaagcgatgaatgcagg
catcgctcgaattcttgggccaaaacggtgatcacatataaaactgagaagccacagagg
ctgccaattgttgatgttaaaatcagagatgttggcgaggctaatcaacagttccgcatc
gaattgggtccagtatgtttttataattga
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integrated database retrieval system
