Anastrepha obliqua (West Indian fruit fly): 129244447
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Entry
129244447 CDS
T09777
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129244447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoq03021
]
129244447
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129244447
Transcription machinery [BR:
aoq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129244447
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129244447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
129244447
NCBI-ProteinID:
XP_054738055
LinkDB
All DBs
Position
4:complement(111807950..111812722)
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AA seq
1433 aa
AA seq
DB search
MFSLCKQSHPATGVEFAICCHFFNNSEENLVIAGANILKVYRIFPHLDAAQRQKLLNTND
LRAPPKMRLECLATYTLYGNVMSLQSVSLAGSLRDALLISFKDAKLSVMQHDPDTFALKT
LSLHFFEEEDVRGGWTGRYFVPMVRVDPDSRCAVMLVYGKQLVVLPFRKDNSLDEIELAD
VKPIKKTPTALVARTPILASYLIALRELDEKIDNVLDLQFLYGYYEPTLLILYEPVRTFA
GRVCVRSDTCVLVAISLNIQQRVHPVIWTVTGLPFDCLQVFPIQKPIGGCLVTTVNSIIY
LNQSVPPYGVSLNSSADHSTNFPLKPQDGVRISLDAASLTFIDIDKLVISLKGGELYVLT
LCVDSMRTVRNFHFHKAAASVLTSCMCVCQSEYLFLGSRLGNSLLLHFTEEDQSTVITLE
DVETNEMAAANDESLPKARRIEDEELEVYGTGAKTSVQLRKYIFEVCDSLLNVGPINFMC
AGERVEFEEDGVTLRPHVENLAELKIEVVASSGHSKNGALCVFVNSITPQVITSFELEGC
LDVWTVYDDASKKNTRHDHHDFMILSQRSSSLVLQTGDEINEIENTGFSCQQPTIFVGNL
GQNRFIVQATTRNVRLLQGTRLIQNVPIDVGSPVVQVSIADPYVCLRVLNGQVITLALRE
TKGSPRLAINKNTISSMPAVIAIAAYKDLSGLFTAKSDDVLNLTGSGGNLLYAGLGYMKA
EPHMKIEDEEDLLYGESGNAFKMNSMADLAKQSKQKNTDWWRRLLPQVKPTYWLITARES
GTLEIYSMPDMKLMYLVNDVGNGGIVLSDSMEFVPVPLSNQENSKAGILLNCMPQHANSP
LALEISMVGLGNQGMRPLLLIRTRLELLIYQVFRYPKGHLKIRFRKLETLNMLDVQPSSM
EVDDLESELESYNLQERYVSKLRYFANISGHNGVMICGVNPHFLFLTVKGELRVHKFYGN
GVIRSFAPFNNVNCPYGFLYFDHTAELKISVLPTYLTYDSVWPVRKVPLRCTPRQIVYHR
ENRVYCLITQTEEPTNKYYRFNGEDKELTEENKGERFIYPNASKFAMVLMSPETWEIVPD
ASIEFEEWEHVTAFKIVKLAYEGTRSGLKEYLCIGTNFNYSEDITSRGNIHIYDIIEVVP
EPGKPLTKFKLKEVFKKEQKGPVSAISDVLGFLVTALGQKIYLWQLTDDDLIGVAFIDTN
IYVHQIISVKSLILIADVYKSVSLLRFQEEFRTLSLASRDFNHLQVYNIEFMVDNSNLGF
LVTDVDKNFLVYMYQPESRESIGGQKLIRKADYHLGQGVNTMFRVQCHQRGQHQRQPFLY
ENKHIVFFGTLDGALGYCLPLPEKVYRRFLMLQNVLLSYQEHLGGLNPKEFRTVKCSKKL
SLNPCRCILDGDLIWSYTMMSTAEKSEVAKKIGTRTEEILADLLDIERIAAVF
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgttttcactgtgcaaacagtctcatcccgccactggggtggaattcgcaatttgctgt
cacttcttcaacaattctgaggagaaccttgtcatagcaggcgccaatatactcaaagtg
tatcgtatttttcctcatctcgatgccgcacaacgtcaaaagttgctaaatactaacgat
ttgcgtgcaccaccaaaaatgcgcctggaatgtctagcaacctataccctttatggcaat
gttatgtcgctacagagcgtatcgctagcgggttccttacgtgatgcacttctcataagt
ttcaaagatgcaaaattgtcggtaatgcaacatgatccagatacatttgctttgaaaacg
ctttccttgcacttttttgaagaggaagatgtgcgcggtggatggaccggacgttatttt
gtaccaatggtacgtgttgatccagattcccgttgtgcggtgatgttagtatatggtaaa
caattagtagtgctgccatttcgaaaagacaacagtttagatgaaattgaattggcggat
gtaaaacctataaagaaaacaccaacagctttggtggctcgcacaccaatacttgcttcg
tatttaatagcattgcgcgaattggacgaaaaaattgacaatgtgcttgatttacaattt
ctctacggttattatgaaccaacgttgttaatactatacgaaccagtgcgcacctttgct
ggacgtgtttgcgtacgttctgatacttgtgtgcttgtagcaatatcattaaatatacaa
caacgcgtgcacccagtaatctggactgtaactggattaccattcgattgcttacaagtt
ttccctatacagaaaccgataggcggttgcctagtcacaactgttaattccataatttat
cttaatcaaagtgtgccaccgtacggtgtcagtctaaatagttcagcggatcatagtaca
aatttcccgcttaagccgcaggatggtgtgcgcatctcacttgacgcggcgagtctcacc
tttattgacatcgacaaattggttatctcgcttaaggggggcgaactatatgttctgaca
ctatgcgttgactctatgcgtacggtgcgaaatttccatttccataaggccgcggctagt
gtgctgaccagctgtatgtgtgtctgtcagtcggagtacctatttctcgggtcacgccta
gggaactccctattgctgcatttcaccgaagaggatcagagtactgtaataacactggaa
gatgtggaaacaaacgaaatggctgcagctaacgacgagtctttgcctaaagcacgacgc
attgaggatgaagagttagaggtatatggtacaggtgcaaagacctcggttcaattacgc
aaatacatttttgaagtctgtgacagtttgctaaatgttggccccattaattttatgtgc
gccggtgaacgtgtggaatttgaagaagatggcgtaacgcttcgtccgcacgtagagaac
ttggctgagttaaagattgaagttgtcgcttctagtggtcacagtaaaaacggagcactt
tgtgtcttcgttaacagtattacaccgcaagtcataacaagcttcgagctagaaggttgc
ttggacgtatggaccgtgtatgatgatgccagcaagaagaatacacggcacgatcatcac
gactttatgatattgtcgcaacgttcctcatcgctagtactacaaaccggtgacgagata
aacgaaattgagaataccggcttcagctgtcaacaaccaaccatttttgtcggtaatctt
ggtcaaaatcgtttcatagtacaggcgacaactcgcaatgtgcggctgctacaaggtaca
cgtctcatacaaaatgtacccatcgatgtgggctcaccagtggtgcaggtctcaattgcg
gatccatatgtttgtttgcgtgtgctaaatggccaggtaataacgctagctttgcgtgaa
acaaaaggctcaccgcgtcttgcaattaacaagaatacaataagcagcatgcctgcagtg
attgcaatagccgcatataaggacttgtctggtttattcaccgcgaaatcggatgatgtg
ctcaatctaacaggcagcggtggcaatttgttatacgctggcttgggatacatgaaagcg
gaaccgcatatgaaaatcgaagatgaagaggaccttttgtatggtgagtcgggtaacgcc
ttcaagatgaatagcatggccgatcttgcaaaacagtcgaagcaaaaaaatactgattgg
tggcgacgtttgctgccgcaagtgaaacccacttactggctgatcacagcgcgtgaatcg
ggtactttggaaatttattcaatgcccgatatgaagttgatgtacttagtgaacgatgtg
ggcaatggcggtattgtgcttagtgactcaatggaattcgtgccagtgccacttagcaat
caggaaaatagcaaagccggtatactcttaaattgtatgccgcaacatgcaaattcacca
ttggctctggaaatcagcatggtgggtttgggcaatcaaggcatgcgtccactacttctg
atacgtacgcgccttgaattactaatctatcaagtgttccgctatccaaaaggtcattta
aaaatccgttttcgtaaattggaaactcttaatatgctagatgtgcagccatccagtatg
gaagtggatgatttggaaagtgagctggaatcatacaatctacaggagcgttacgtcagc
aaactacgttactttgccaacattagtgggcacaatggcgtaatgatctgtggcgtgaat
ccacatttcctttttctcaccgtcaagggcgagttgcgcgttcacaagttttatggcaat
ggcgttatccgcagttttgcgccctttaacaatgtcaactgtccttacgggtttttgtac
ttcgatcatacggctgagctaaagatatcggtgttgcctacttatttgacctacgattcc
gtgtggccggtgcgtaaagtgccgttgcggtgtacaccacgccaaatagtctaccatcgc
gaaaatcgtgtctattgcctaattacgcagaccgaagaacctaccaacaagtactatcgc
ttcaacggtgaagacaaagaattgacagaagaaaataaaggcgaacgatttatctatccc
aatgcttctaaatttgccatggttcttatgagtccggagacatgggaaatagtgccagat
gcttccatagaattcgaggaatgggagcatgtgaccgctttcaaaattgtaaagctcgct
tatgagggtacccgttccggtcttaaagaatacctttgtattggtacgaatttcaactac
agcgaagacatcacttcacgcggcaatatacacatttacgacataattgaagtggtacct
gaaccaggaaaacctctaacgaagtttaaattgaaggaagttttcaaaaaagagcaaaag
ggtcccgtttcagccatatctgatgtgctcggctttctggtaacggcactgggtcaaaag
atatatttgtggcagttgacagatgatgatctcattggggttgcctttattgacacaaat
atctacgtgcatcaaataatatcggtcaagtcactaattttaattgctgacgtttacaaa
tctgtcagtttgctccgtttccaagaggaattccgtacactatcgcttgcgtcacgtgac
ttcaatcacctgcaggtctacaatattgaattcatggtggacaacagtaatttgggattc
ctagtcacagatgtagacaaaaacttcctggtctacatgtaccagccagaatctcgcgaa
tctatcggcggccagaaattgatacgcaaagcagattatcaccttggtcagggggtaaat
acaatgtttcgtgtacaatgccaccaacgcggccagcaccagcgacagccattcttatac
gaaaataagcatattgtattctttggtactctggatggcgcgcttggctactgtctgcct
ttgcctgagaaggtgtaccggcggtttttaatgttgcaaaatgttttgctgtcctaccaa
gaacatttgggtggactgaatccaaaggagttccgtacggtgaagtgctctaaaaagtta
tcgctaaatccgtgccgctgcattcttgacggtgatctaatttggtcttacacaatgatg
tcgacagcggaaaaaagtgaggtggcgaaaaaaattggcacacgcacagaagaaattctg
gccgatctgttggacattgagcgtattgcggcggtattctaa
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