Anastrepha obliqua (West Indian fruit fly): 129244982
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Entry
129244982 CDS
T09777
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129244982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129244982
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129244982
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129244982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_1st
CNOT1_HEAT
DUF4327
Motif
Other DBs
NCBI-GeneID:
129244982
NCBI-ProteinID:
XP_054738889
LinkDB
All DBs
Position
4:53220688..53240734
Genome browser
AA seq
2495 aa
AA seq
DB search
MNQLKFTLAQIGILVIQLNKKNFAETSESINQYIKEIGLEADRHCLRCLFSAINFTDTTS
TSPNSNYNFIVQAQAKLLGAQLENQLSRASVISNICFAVDHCFPQQKTLKPTPQLIAQIA
KLTGISKLCEVVLSIALTHSTQPDLSEYSLEHLKRSFPELIESFLENKDSTASIGSNLQN
VSIDILQLIIVYLDEFVSKQLRNNFFDILRKQFPLERASIILAPHLYRQTTLCANETVCC
ESTSSLEVLDAEEVYDKDTTITTADGGVASQHLTEIGIEDIYDNLCETIFTTQVNSNIMD
TSWINLILEIGYEFTSSVEECKNHLRCGSRELQSQDVAKIIGLMCRRHSSLLDCNVNLGT
PANFWPGQQGAGPGTQQQQNVANNNDGSNVTGSGVDKAANVNDKKDKVGGNAAGTTSTET
TQAWKPDAFVQALKEVVPQLNWKEVCLELDHPEFIIKDRIGLDLLLTIFRLGTQSALFPH
PECIYRHWQNVNGQLSLIAVMLKNPDLFSFSDYIFTAAPVEMLKTPPDSDNKEVCAWKSL
HLVEVLLYIADQGYYPQVIELFKFPAQHSPDILFLSLLHINPPITALRQELFSQLIPTFL
TNHPNSGVVLLNAWNSANFGVVLRPIVMQAMSEWYQRGTEYDQVKLSRILDVAQDLKALS
TLLNERSFLFVIDLACLASRREYLKLEKWLSDKIREHGEPFIQAILKCLQRRCPQITNAK
IPESQLPSKQAQLPPETVTTMLQCLQACIVNVPPEIADLIMQMTANCSIMANKARAAVPP
LVPQLQGVMRGHRGMDMGGGVPGVPPPPFSANLNAQQMFGPTMDTLSNLTTNIANLNLGG
PNGAFNFGNVLGNLASTPASPSRLMNPAASPYPLNAMQIPPPNVGNLARMPPTAPQPTPT
PPNPINPGMADLQGPVSKEVEDEANSYFQRIYNHPPHPTLSIDEVLDILQRFKDSNIRRE
QEVYQCMLRNLFEEYRFFPHYPEKELQITAQLFGGIIERNLVPTCVALGLALRCVLDALR
KQDSKMYNFGITALDRFKNRLHSYNKYCEYIRSIAHFHEFPPHLIQYVECGYLQQEPPPA
KIQMLMSGSGQQAPPDSIYRSNSVTGNLVTTPTQQKPMVVAQSIHASRMKSIATATNIDT
LLVANQEEKVTIPPEPVQDKTAFIFNNLSQLNIPQKCEEIKEIMTKEYWPWLAQYLVLKR
ASLEFNFHTLYFNFLEALKNPEINKYVTKETLRNIKVLLRSDKGVVNFSDRSLLKNLGHW
LGMMTLGRNKPILQIELDLKTLLAEAYHKGQQELLFVVPFVAKILESSNKSKVFKTPNPW
TMAIMNVLGELHQEPELKLNLKFEIEVLCKTLNIELQKLKPIVYLKDPSRSMNIEHQMSQ
PKPKNIEAPPQQQQPSQGQTPGPGQMGPNDPDAQALLMGSGSAIGGGSGGGGAGGGNVPG
GVVPSPSISNESAGQVIMQAPEPRFSFVEINIANFHLIAQHVVLSPNITFLHANPGLKHI
VLNAIERTITEWLQPVVDRSVRIAVTTTEQIVRKDFGLDPDENRMRTAAHQMVRYLSAGM
AMITCKDSLSQTLTNNIRKAFLSALTGGPGYQEIEAAALQLSNDNVELACAFIQKTAAEK
STPEIDRRMSTDFDTRKMTRDEGGRFYDTQTLAYQTERMPEQVRLKVGGIPHTQFAVYAE
FARNIPGFQPMTERDIALFLPKPQEIAPASFGTDELGLMYADLAGKMEAFLNSTINVSTL
QLQAGKMHALLNALMVTRRIRDNESALNLLTRVVEGLVEGLVNIPEHIEQMKLYRDIHLR
ILTLLQNTFGAGVTERAITKCIFDIREEVRYNVEATKLLITSHFINVPQFDLLLREAMDN
GNNYMAVTFAMTLMERLLDGRSSTTLETEMTGTFEMLGRLPQNRHRYPEALTHQIDMMDA
GPFGGAERYLAGATQYMHSGMQHVRSNDCDDPPGLQEKTEFLLKDWVSIYNQSNNMSRET
KIFTSFVQKMNMYGILKTDDLITRFFRQATQICIDLVYRILNDPNNSPLQARTKIFHWMD
AFVHLIALLVRHSGESGNPTTKINLLNKVLGIVLGILLQDQELHGTAFQQLGYHRFFVML
FLELSSPDAVLESLMHSIMTAFSHTYHLLNPTLAPGFCYAWLELISHRIFIGRILAQIPQ
QKGWPLYSQLLLDLFRYLAPFLRNAELAKPVQLLYKGTLRVLLVLLHDFPEFLCDYHFGF
CDAIPPNCIQMRNIILAAFPRNMRLPDPFTPNLKVDMLAETATAPKICSNYVFNIQPANF
KKDLDSYLKARAPVTFLSELRSHLQISNEPGSRYNIPLMNALVLYVGTQAISHIRSKNFV
PNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEAN
SEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEISREIKCF
PPYLLRLFESVARSCMVKNHPPQMNNMDGEIQEIN
NT seq
7488 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaactgaaattcacgctagcgcagattggtattttggtcatacaactgaacaag
aaaaattttgctgaaactagtgagagcataaaccagtatattaaagagattggcttggaa
gcggaccgccattgtttgcgctgcctattctcggccatcaattttactgatacgacgtca
acaagtcccaattcgaactacaatttcatagtacaagcacaagcgaaattacttggtgct
cagttggaaaaccaactatccagagcgtctgtcatatcgaatatatgctttgccgtcgac
cattgctttcctcaacaaaagactcttaaaccgacaccgcaactcattgcgcaaatagct
aaattaacaggaataagtaaactctgtgaagtggtattgtcaatagcattaacacactca
acccaacctgatttaagtgaatactctttggaacatttgaaacgttcatttcccgagctt
attgaatcatttttggaaaacaaagactctaccgcttctattggaagcaatttacaaaac
gtttccatagatatcctgcaactaattatcgtttatctagacgagtttgttagcaaacaa
ctcagaaacaatttttttgatatattacggaaacagtttccgctagagcgtgcttcaatc
atcttagcaccacatttatatcgtcaaacaactctttgtgctaacgagactgtatgttgt
gaatccacatcatcattggaggttttggatgcagaagaagtttatgacaaagacactact
attacgactgcagatgggggcgttgctagccagcatttgactgaaattggcattgaagat
atctatgacaatttatgcgagacgatatttacaacacaggtgaatagtaatattatggac
acatcctggattaatttaatcctagagattggttacgaattcacatcaagcgttgaagaa
tgtaagaatcatctacgttgtggttcgcgcgaacttcaatcacaggatgtggccaagatc
attggccttatgtgccgtaggcactcgtcgctacttgactgcaatgtgaatttaggaaca
cctgccaatttttggcctggtcagcagggtgctgggcctggtacgcaacaacaacaaaat
gtggccaataataatgacggcagtaacgttacgggcagcggcgttgataaagcagccaat
gtaaatgacaaaaaagacaaagtcggcggtaatgcggcgggaacaaccagcactgaaaca
acacaagcctggaaaccggatgcgtttgtgcaggcgttaaaggaggtggtgccacagctg
aattggaaggaggtgtgcttggaacttgatcatccggaatttattataaaggatagaatt
ggcctggatcttctactcaccattttccgtttgggcacacaatctgctctattcccacac
ccagaatgtatatatcgtcactggcagaacgtgaacggacagctatcgctaatagcggtt
atgctaaagaatccagatttgttttccttttccgattacatcttcactgccgcaccagtg
gagatgctaaagacaccaccggattctgataacaaagaagtgtgcgcttggaaatcgctg
catttagttgaagttttgctgtacattgccgatcaagggtactatccacaagtgatagaa
ttgttcaaattcccagcgcaacatagcccggatatactatttttatcgttattacacatc
aatccaccaatcactgcattacgacaggaacttttcagtcaactcataccgacgttcctt
acaaatcatccaaattcaggtgtagtcctgctaaatgcatggaattccgcaaacttcggt
gtcgttttacgtcctatcgttatgcaagccatgtcagaatggtaccagcgcggcaccgaa
tacgaccaggttaagctgtcgcgtatactcgatgtagcgcaggatttgaaagcactatcc
acgctgctcaatgaacgttcttttctatttgtaatcgatttagcgtgtttggcatcgcgt
cgtgaatacctaaaattggaaaaatggttaagtgataagatacgcgagcatggtgagcct
ttcattcaagcaatactgaaatgtctacaacgtcgttgcccacaaattacaaatgccaaa
ataccggaaagtcagctgccatcaaaacaggcccagctaccacctgaaacggtgacaaca
atgttgcaatgcttacaagcctgtattgtcaatgttccaccagaaatagctgaccttata
atgcaaatgacagcaaactgctcaattatggcaaataaagcaagagctgccgtaccacca
ttagtgccacaactgcaaggtgtaatgcgtggacatcgcggaatggatatgggcggtggt
gtaccaggagttccaccaccacctttttctgctaatctgaatgcacaacaaatgtttggt
cccacaatggatacgctatcaaacttaacaacaaacatagccaatttaaatcttggtggt
ccgaatggagccttcaatttcggaaatgttttaggtaatttggcgtccaccccagcttct
ccgtcgcgtcttatgaacccagctgccagtccatatcccctcaatgcaatgcaaataccg
ccaccaaatgtcggcaatttggcacgtatgccaccaacagcaccgcagcccacgcctaca
ccacccaatcccatcaatccgggcatggccgatctgcaggggcctgtctccaaggaggtt
gaagatgaggccaattcatattttcaacgtatttacaatcatccaccacatcccactctc
tccattgacgaagtacttgatatactgcaacgtttcaaggactccaatatacgtcgtgaa
caagaagtttatcaatgcatgctacgtaatcttttcgaagaataccgcttcttcccacat
tatcccgaaaaagaattacaaatcaccgcacaattatttggaggcattattgagcgtaat
ctagtgccaacatgcgtggcattaggtttagctttgcgctgtgttttggatgcattacgc
aaacaggattcgaagatgtataattttggcataacagcattggatcgtttcaaaaatcgt
cttcattcctacaacaaatactgcgaatatattcgctccattgcacattttcatgagttt
ccaccgcatttgatacagtacgtggaatgtggctatttacaacaggagccaccaccagct
aaaatacaaatgttgatgtcgggaagtggacaacaggcaccgcccgattcaatttatcgc
agcaattcagtgaccggtaacttagtaacaacaccaacacaacaaaaaccaatggttgtt
gctcagtctatacatgcttcgcgtatgaaatccatcgccaccgcaactaatatcgatacg
ttattggtcgccaatcaggaagaaaaagtcactataccacccgaaccggttcaggacaaa
actgcattcatattcaataatttaagtcagctgaatataccgcagaaatgtgaagaaatt
aaggagattatgactaaggaatattggccctggctggcacagtatttggtgctgaaacgc
gcttcattggagttcaattttcatacattgtatttcaatttcttggaggcattgaagaat
cctgaaatcaataaatacgtaaccaaggagactttgcgcaacatcaaagtcttactgcgt
tctgataagggtgtggtgaatttctccgatcgcagtttgctaaaaaatctgggtcattgg
ttgggcatgatgacactgggtcgcaataaacctattctacaaattgaattagacttgaaa
acattattagccgaggcatatcacaaaggacaacaggaattactctttgttgtgccattt
gtggcaaagattttggagtcgtcaaataagtcgaaggttttcaaaacaccaaacccctgg
acaatggctatcatgaatgtgcttggtgaattacatcaggagcctgaattgaaacttaat
ttgaagtttgaaattgaagtgctttgcaagacgttaaatattgagttgcagaaactgaag
ccaattgtctacttgaaagatccttcacgttcgatgaatatcgagcatcagatgtcgcaa
cctaaaccgaagaatatcgaggcaccgccacaacagcagcaaccgtcacaaggtcaaacc
ccgggacccggtcaaatgggtcccaacgatccagatgcacaagctttgcttatgggcagt
ggtagtgctattggcggcggcagtggtggcggtggcgccggaggaggaaatgtaccaggc
ggtgtagtgccttcacctagcatcagcaacgaatcagccggacaggtcattatgcaagcg
ccagaaccgcgtttctcttttgtggaaattaatatagccaatttccatctcatcgctcaa
catgtggtactttcgccaaatattaccttcttgcatgccaatcccggcttaaagcatatt
gtgctgaatgcaattgaacgcacaatcactgaatggctgcaaccagttgtggatcgtagt
gtacgtattgctgtgacaaccacagagcaaattgttcgaaaagattttgggctcgatcca
gatgagaatcgcatgcgtacagctgcacaccagatggtgcgctatttgtcagccggtatg
gcaatgattacttgcaaggactccttatcccagacattgacaaacaatatacgtaaagct
ttcctatcggcgctgactggcggtcctggctaccaagaaatcgaagcagccgcattgcag
cttagcaatgacaatgttgaactcgcttgcgcttttatacaaaagacagcagctgagaag
tcaactcctgaaatagaccgccgcatgtccaccgacttcgatacacgcaaaatgactaga
gatgaaggaggacgcttctatgacacgcaaacattggcgtatcaaacggagcgcatgcca
gaacaggttcgtttaaaagtaggcggcataccacatacacaatttgctgtgtacgcggag
ttcgcacgcaacataccaggcttccaaccgatgactgagcgtgatattgcactattcttg
cccaagcctcaggagatagcacctgcttctttcggcaccgacgaattgggtctcatgtat
gccgatttagctggcaaaatggaagcatttctgaacagcacgataaatgtatccactttg
cagctgcaggctggcaaaatgcatgcgttgctcaacgcgcttatggtaacaaggcgtata
cgtgataacgaatcggcactcaaccttttaacacgcgttgtggagggcttagttgaaggt
ctggtgaacataccagagcacatcgagcaaatgaagttgtaccgggatatacatttgcgc
atattgaccttgttgcagaacacatttggtgccggagtgacagagcgcgcaattacgaaa
tgcatcttcgatatacgggaggaagtgcggtacaatgtggaagcgaccaaattgcttata
acttcccatttcatcaatgtgccacaattcgatttgttgttgcgggaagccatggataat
ggcaataattacatggcagtaacgtttgctatgacattgatggaacgtctgcttgatggt
cgctcgagcaccacattagagacagaaatgactggcacatttgagatgctgggacgttta
ccacagaatcgtcatcggtacccagaggcgctgacccatcaaatagatatgatggatgcc
ggaccatttggcggcgctgaacgttatttggctggcgctacgcaatacatgcactcgggc
atgcaacatgtgcggtcgaacgactgcgatgatccacctggtttgcaagagaagaccgaa
tttctgctaaaggactgggtgtccatctacaatcagtctaacaatatgtcacgtgaaacc
aagatctttacctcattcgtacaaaagatgaatatgtacggaattttgaaaaccgatgat
ttgataacgcgcttcttccggcaagcaacacaaatttgcattgacttggtgtatcgcata
ctcaacgatcctaacaattcaccattgcaagcgcgcaccaaaatcttccactggatggac
gcatttgtgcatttaattgccctgctggtacgccactctggcgaatcgggtaatccaacg
acgaaaatcaacctgctgaacaaggttctgggcatcgttctaggtatactgctacaagac
caagaattgcatggcaccgcattccaacagctcggctatcatcgctttttcgtgatgcta
ttcctggagctgagctcgcccgacgcagtgctggaaagtctaatgcacagcattatgact
gcattttctcacacgtatcacctcctaaatccaacgttggcacccggattttgttacgct
tggttagagctgatctcacatcgcatttttatcggacgtatactcgcacaaataccgcaa
cagaagggatggccattgtactcacagttgctactcgatctgttccgctatttggcacca
ttcttacggaacgccgagctagcgaagcccgtacaattgctgtacaagggaacgctgcgc
gttctgctcgttctattacacgatttccctgaatttttatgcgactaccactttggcttt
tgtgatgcaataccgccaaattgtatccaaatgcgcaacataatattggctgcttttcca
cgtaatatgcgcctgcccgatcctttcacgcccaatctaaaagtggatatgttggcggag
actgccacggcgcctaaaatttgctccaactacgtattcaatatacaaccggcgaatttc
aaaaaggatctcgactcgtatctaaaagcacgcgcaccagttactttcctctcagagctg
cgctcacatttgcaaatctcaaacgaacccggttcacgttacaacattccgctgatgaat
gcgttggtgctgtatgtgggcacgcaagctatttcgcacataagaagtaaaaatttcgta
cccaatacatcaaacatcgcgcacagcgcacacatggatattttccagaatttggccgtt
gatttggataccgaaggacgctatctcttcctgaatgcaatcgcaaatcagctgcgttat
ccgaatagtcatacgcactattttagctgtgcggtactacatctcttcgccgaagcgaac
tcagaggcgattcaagagcaaatcacacgtgtactacttgaacgccttattgtgaatcgt
ccacatccatggggtttgttaatcacctttatagaactgattaagaaccccatctacaag
ttctgggatcatgactttgtgcattgtgccccagagatttcaagggagataaaatgtttt
cccccttatttgcttaggttattcgaatcggtggcacgttcgtgtatggtgaagaatcat
ccgccgcagatgaacaatatggatggcgaaattcaggaaatcaattaa
DBGET
integrated database retrieval system
