Anastrepha obliqua (West Indian fruit fly): 129245364
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Entry
129245364 CDS
T09777
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129245364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129245364
03041 Spliceosome [BR:
aoq03041
]
129245364
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129245364
Spliceosome [BR:
aoq03041
]
Complex B
Other components
Prp19-related factors
129245364
Complex C
129245364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
Mad3_BUB1_I
TPR_8
TPR_15
TPR_10
PPR
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
129245364
NCBI-ProteinID:
XP_054739451
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Position
4:109791237..109794424
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AA seq
879 aa
AA seq
DB search
MTLIDKPLVAVDIDFPEEDVPYEEEILRNAYSVKHWLRYIEHKSKSPNFGVNIVYERALK
ELPGSYKIWYNYLRTRRKQVRGRPLTDPMYDEVNNTFERALVFMHKMPRIWMDYGVFMTA
QCRITRTRHVFDRALRALPITQHHRIWPLYLKFVRRFDIPETALRVYRRYLKLCAEDAEE
YIEYLTEVELLDEAAQQLASVVDNEHFVSKHGKSNHQLWNELCDLISKNPDKVHSLNVDA
IIRSGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EEVSLNRRMEMVANDPHATEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEGKPHEIINTYTEAVQTVQPKLAAGKLHTLWVEFAKFYESNEQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMEIRQENFEGALRLMQKASAMPKRKVAYHDDTETVQMRLY
RSLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINYGLFLEEHNYFEEAFRAY
EKGIALFKWPNVYDIWNAYLTKFLKRYGGTKLERARDLFEQCLENCPPEHAKYFYLLYAK
LEEEHGLARHAMAVYDRATSAVKSEEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPE
ENMRPMCVRFAEMETKLGEIDRARAIYAHCSQVCDPRITAEFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLNQTGASNAAADGGGDAMRLLEAKAAAEQQARQQQT
LKAQTSGNIMFVRGETQGGNAKDKVVNPDEIDIGDSDDEDEEDVDDDAVNGAANGADKRG
GNEENVIAAKRLRIEQQAIPAKVFGSLKKATDEDDQDAD
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcattgataagccgttagttgcagtcgatattgatttcccagaggaagatgtg
ccctatgaggaggagattttgcgtaacgcatactccgtgaaacattggttgcggtacata
gaacacaaatccaaatcgccgaactttggcgtgaacatcgtttatgagcgcgcacttaaa
gagttgcccggtagctacaaaatttggtataactatttacgtacgcgccgtaagcaagtg
cgtggtcgccctctaactgatcccatgtacgatgaagtcaacaataccttcgagcgagcg
ttagtgtttatgcacaaaatgccacgcatttggatggattatggcgtctttatgacagca
cagtgccgcattacacgtacccgacacgtgtttgatcgtgctttgcgtgcattgcccatt
actcaacatcatcgcatttggccgctctatttaaaatttgtgcggcgtttcgatatacca
gagacagctctgcgcgtttataggcgctacctgaagttgtgcgcagaagatgcggaagag
tacattgaatatctgactgaggtagagctattggatgaagctgctcaacaattggcatca
gtggtggacaatgaacatttcgtgtcgaagcatggcaaatcaaatcatcagttatggaat
gagttatgcgatttgatttcgaaaaatcctgacaaggtacattcgttgaatgtggacgcc
ataatacgcagtgggctcaggcgttatacggaccagcttggacatctttggaattctttg
gccgattactatgtgcgttcgggtctgtttgatcgcgcacgcgatatttatgaggaggcc
atacaaaccgttacaacagtgcgtgattttacacaagttttcgatgaatacgcccaattc
gaggaggtctcgttaaatagacgcatggaaatggtggccaacgatccacatgccaccgaa
gaagatgacattgatgtggaattgcgactggcgcgctttgagtatcttatggagcgtcgt
ctgttgcttttgaacagtgtgctactgcgccagaatccacacaatgtacatgagtggcat
aagcgcgtgaaattgtatgagggcaagccgcacgagatcatcaacacatacaccgaggct
gtgcaaactgtgcaaccaaagttggctgctggcaagctgcatacattgtgggtggaattt
gcgaaattttacgaatcaaatgagcaagtagaggatgcgcgcgtggtttttgagcgtggc
accgaggtggagtatgttaaggtggaagatttggccgcagtatggtgtgaatgggccgaa
atggaaatcaggcaagagaatttcgagggtgcattgcgcctaatgcagaaagccagcgcc
atgccgaaacgtaaagttgcctatcatgacgacaccgagaccgtacagatgcggctatat
cgttcgctgaaagtttggtctatgtacgccgatttagaggaatcctttggcactttcaaa
acatgcaaagcagtctacgatcgtataattgatttaaaaatttgcacacctcaaataatt
atcaactatggcctctttttggaagagcataattattttgaagaagcttttcgcgcctat
gaaaagggtattgcgctatttaaatggccaaatgtatacgatatttggaatgcatatttg
acgaaatttctcaaacgctatggtggcacaaagctggagcgtgcgcgcgatcttttcgaa
caatgtttggaaaattgtccgcccgaacatgccaagtatttttatttgttatatgcgaaa
ttggaggaggagcacggtttggcgcgtcatgccatggccgtttacgatcgcgcaacaagc
gccgtcaaatcagaggagatgttcgacatgtacaatattttcataaagaaagcagcggag
atctacggcctgccgcgtacgcgcgaaatctatgagaaggccattgaggcgttgcccgaa
gagaatatgcggcccatgtgtgtgcgctttgcagagatggaaacaaagctaggcgaaatt
gatcgtgcgcgcgcaatttacgcgcattgctcgcaggtgtgtgatccacgtataactgcc
gagttttggcaaacatggaaagagttcgaggtgcgccatggcaatgaggataccatgcgc
gaaatgctgcgcatcaaacgttcagtgcaagccacgtacaatacacaggtgaatatgatg
gccgcacaatttctcaatcaaacgggcgcaagcaatgcagccgcagacggtggtggtgat
gcgatgcgtctacttgaggctaaggctgcggcagagcaacaggcacgccagcaacaaaca
cttaaagcacaaactagtggcaatattatgtttgtgcgcggcgaaacgcagggtggcaac
gcgaaagacaaagtggtcaatccggatgaaatcgatattggcgatagtgacgacgaggac
gaagaggatgttgatgatgatgctgttaatggggcggcaaatggcgctgacaagcgcggc
ggaaacgaagaaaatgttatagccgccaaaaggttgcgcatcgagcagcaagcgataccg
gcaaaagtgtttggcagcttgaagaaagccacagatgaagatgaccaagacgcagattga
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