Anastrepha obliqua (West Indian fruit fly): 129245556
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Entry
129245556 CDS
T09777
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129245556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129245556
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129245556
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
129245556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
129245556
NCBI-ProteinID:
XP_054739748
LinkDB
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Position
4:complement(915256..916765)
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AA seq
296 aa
AA seq
DB search
MANISLSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETDLVSNASGSARLRLANTDVLV
GIKTEIDKPNYLTPDQGKIEFFVDCSANAAPEFEGRGGEELALELADTLTNAYESPKAFD
LKFLCILPGQQCWKLFVDILILECGGNLFDAVSLAAKAALFNTKIPRVTAALMDAGEADL
IISDDPYDCTRIQIENLPILVTVCKIGDSCVVDPSAEEEECSIASVVVGVSKRNGKSYMS
NVHTIGEGSLHKDTMHNCVLLGLSAADDLNNELVKALNVEEQRVGSKRRNTIGFLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggctaacatttctttaagtgaagcggagaaaacttttatattacacggcgtggaggaa
gattttcggtgcgatggacgctcgcgacgtgattatcggcccatggaactggaaactgat
ttggtgagcaatgccagcggttcagccaggttgcgtctagccaataccgatgtgttggtt
ggtattaagactgaaattgataagccaaattacttaactccggaccagggaaaaattgag
ttttttgttgattgttcagcaaatgcggctccggagtttgaaggacgcggaggggaggaa
ttagctttagaattggcagatactttaacaaatgcgtacgagtccccaaaggctttcgat
ttgaaatttctttgtattctacctggccaacaatgctggaagcttttcgtagacattttg
atcttagagtgcggggggaatttatttgatgcagtgtccttggcggcaaaggcagctttg
tttaacacgaagataccacgtgtgacggcagcacttatggatgccggtgaagctgactta
ataatatcagatgatccttatgattgtactcggattcaaattgaaaatttgcctattttg
gtgacagtgtgcaaaattggagattcctgtgtagtagacccttcggcagaagaggaagaa
tgcagtattgccagcgttgtagtcggtgtttcaaaaagaaatggcaaaagttatatgtcg
aatgtccatacaataggggaaggatcattacataaggataccatgcataattgcgtactt
ctgggtttatctgcggctgatgacttgaacaacgaattggtgaaagcattaaatgttgaa
gagcagcgggtgggatccaaacgtcgtaatactataggatttctcaaataa
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