Anastrepha obliqua (West Indian fruit fly): 129246375
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Entry
129246375 CDS
T09777
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129246375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoq03021
]
129246375
03036 Chromosome and associated proteins [BR:
aoq03036
]
129246375
Transcription machinery [BR:
aoq03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129246375
Chromosome and associated proteins [BR:
aoq03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129246375
PBAF complex
129246375
GBAF(ncBAF) complex
129246375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
129246375
NCBI-ProteinID:
XP_054741119
LinkDB
All DBs
Position
1:complement(9575708..9580454)
Genome browser
AA seq
1156 aa
AA seq
DB search
MNTLGPKKDGSPNVEFFQSTESLQGFETIRLWLQKNCKKYLANNTETITKESLAQLLIQF
LQYVEAKLGKNAQEPPATRIPMRLFMDFKPGGGLCVIFSAMFRFRAEQRGKKFDFSVGKN
PPRKDPNIQLLIDIETALVEANLYPIHYIYIRPEISKELAQRLRDILITRRVQIVTDEEE
ATHIIYPVVDPHPDEYARPVFKRGNHVMLHWYYFPESYDSWAINSFDLPEYVPENPEQPA
EPWLVSASWVLDLEQYNEWMVEEDYEVDETGKKKTHKHRMSVDDIMSFGADEKKRVPGTS
GTTTKQKRRRSPSPNTSKPGKRKRSPAVLHKKARNDEDDEDLTRDMDDPPAEPNVQEVVK
SSSLQSTASPAPGGKSRADNDMIPIKGGTMTDLDDEMTGGSAVQALSTGDGENSQTGKTS
DNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMSEFFNGKNKSK
TPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAE
LRPTPMGPPPTSHFHILSDTPSGLQPLNPQKTQQPSAAKALLDLDKPKVIKDGKEGSVEG
DKPPLLPGGISIKSEALENGATTGQQFGLKLDQYAKKPAAMKNRTAANMTREWTDQETLL
LLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSK
SGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASASGKF
NPSFGLANSGIAGTGADKEDEDVHGVGAVPGSMPVNTGAIDEEMRDVSKKDVANKAETKN
SETESKKKSDNVCKNGAEIKTEDTNDTDTSSKDTEAAKQQVFNETNVQTAAAAALASAAV
KAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITER
QQFHLEQLKAAEFRARQQAHHRLQQEQQWQGTAGSNASGGAPPASNPNASLGSTGNLPSA
TGQSIVTGATTTNANAAPSTGVGSVGPQGATATNQSTATSASIGGNAQQTTTAPLGLPVA
ASASIQQQIATPMDTSSTSIAVPSAAGDGATITAQTILPPVGVSAGTSLPSCANAPLANV
QPTIPPCGAPPVVPPS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaacactctagggcccaaaaaggacggaagtcctaatgttgaatttttccaatccacg
gaatcattgcaaggttttgaaacaattcgtctgtggctacagaagaattgtaaaaaatat
ttagcaaataatacagaaacaatcacgaaggaatcgcttgcgcaattgcttattcaattt
ttgcagtatgtggaagccaaactaggcaaaaatgcacaagagccaccggcgactcgaatc
ccgatgcgtttattcatggattttaaacctggcggtggcttatgtgtcatctttagcgca
atgtttcgattccgcgctgaacaacgtggcaaaaaatttgatttttctgttggcaaaaac
cctccacgtaaagatccaaatatccagttattgattgatattgaaacggctctcgttgag
gcaaatctttatcctattcattatatttatatacgaccggaaataagcaaagaattggct
caaagactgcgtgatattttgattaccaggcgggtacagatcgttaccgacgaggaagaa
gctacacacattatttacccagtggttgatccacacccggatgaatatgcacgtccagtt
tttaaacgaggaaatcatgtaatgttgcattggtattacttcccggaatcttatgattcg
tgggctatcaactcatttgatttaccggaatatgtgcctgagaatcctgaacaaccagcc
gaaccatggctcgtgtcggcatcttgggttttagatctggaacaatataatgagtggatg
gtcgaagaagactacgaagtagatgaaacaggcaaaaagaaaacgcacaagcaccgtatg
tccgttgatgatataatgtcgtttggagccgacgagaaaaagcgcgttcctggtactagt
ggtaccaccactaaacaaaagcgccgccgctccccttctccaaacacttcaaagcctggt
aagcgtaaacgatcacccgccgtattacacaagaaggcgcgtaatgatgaagacgatgaa
gacttgactcgggatatggatgatcctccagcagagccaaatgtgcaagaggttgtaaag
tcatcgtcgctgcaatcaactgccagtccagctcctggcggaaagtcgcgagccgacaat
gatatgatacccattaaaggtggtacaatgacggatttggatgatgagatgacaggcggc
agtgcagtgcaagctctttccaccggtgacggtgaaaattcacaaactggcaaaacaagt
gacaacagtaatactcaggaattttcttcctctgctaaagaagatatggaggataatgtt
accgaacagacgcaccacatcattgtgccgtcatactccgcctggtttgactacaattct
atccatgtcattgaaaaacgagccatgtccgaatttttcaatggcaaaaataagtcgaaa
acaccggaaatctatatggcatatcgaaattttatgattgacacatacagattaaatccc
actgagtatttaaccagcaccgcatgtcgcaggaatcttgctggtgatgtttgcgctata
atgcgtgtccacgcgttcttggagcagtggggtctaattaactatcaaatagacgctgag
ctgcgtccaactccaatgggtccaccgcctacttctcatttccatatattatcagacaca
ccatctggtttgcaaccattaaatccacaaaaaacacaacagccatcagcagcaaaagct
ttgcttgacttggacaaaccaaaggttattaaagatggtaaagaaggttcggtggaaggt
gataaaccgccactcttacctggcggtataagtatcaaaagcgaagctttggagaatggt
gcaaccactggccagcaattcggcttgaaactagatcaatatgcaaagaagccagctgca
atgaaaaatcgaaccgcagctaacatgacgcgcgagtggacggatcaggaaactttgctt
ttgctcgagggcctcgaaatgcataaggacgactggaataaggtttgcgaacatgtagga
acacgcacccaagacgagtgcatactgcattttcttcgattgcctatcgaagacccatat
ctagaagatgatggtggatttttgggaccgctgggttgtcaaccaataccatttagtaaa
tctggcaatcctataatgtcgacagtggcgttcttagcttcagtagtagatcctcgcgta
gccgcggcagctgcaaaagctgcaatggaagaatttgctgctataaaggacgaagtaccc
gctacaattatggataatcatatgaagaacgtggaaaaagcttctgcgagtggtaaattc
aatccatctttcgggctagcgaacagcggcatagccggcactggcgctgacaaggaagac
gaagacgttcatggagtaggtgcagtaccaggatcaatgccagtgaacacaggtgcgata
gatgaagaaatgagggatgtttcgaagaaagacgttgctaataaggccgagacgaaaaat
agtgaaacagagtccaaaaagaaatcagataatgtctgcaaaaatggtgctgaaattaaa
actgaagacaccaatgacacagataccagttcaaaagatactgaggccgcaaagcaacaa
gtatttaatgaaacgaatgttcagaccgctgcggccgcagccctggcctcggctgctgtt
aaagccaagcacttggctgctttggaggaacgtaaaatcaagtcgctagtggctttgctg
gtcgagacgcaaatgaaaaaattagaaataaaacttcggcatttcgaagagctagaaaca
acaatggaacgtgaacgagagggactagagtatcagcggcaacaactaataaccgagcgc
cagcaattccatttggagcaactgaaagctgcagaattccgagcccgtcagcaagcccac
catcgtctgcaacaagaacaacaatggcaaggaacagctggatcaaatgcgtcaggcggt
gcgccaccagccagtaaccccaatgcctctctcggaagtaccggtaacctaccgtctgca
accggtcaatctatagtaactggcgccaccaccacaaatgccaatgcagcgccatcaact
ggtgtaggcagtgttggaccgcaaggcgcaactgcgacgaatcaaagtacagccacatct
gcatctataggtggcaatgcacaacaaactacaacagcaccgcttggtttacctgtcgca
gcatcggcttctatacagcagcaaatagccactccaatggacacatcatcgacatccatc
gctgtaccgtcagctgctggagacggcgctacgatcactgctcagacaattttgccacca
gtcggtgtatcagctggtacatcactaccctcatgtgcaaatgcaccactagcaaatgtg
caaccaaccattcctccatgtggagcaccacccgtagtgccgccatcataa
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