Anastrepha obliqua (West Indian fruit fly): 129246399
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Entry
129246399 CDS
T09777
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129246399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129246399
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129246399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
RuvB_N
Motif
Other DBs
NCBI-GeneID:
129246399
NCBI-ProteinID:
XP_054741171
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All DBs
Position
1:complement(82850386..82853740)
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AA seq
903 aa
AA seq
DB search
MTPTIATKVGEETATSAEQEKKVPNVTSLGNFASVEEFAKNGLAEIMVATKATNSFPQGA
ARDLYCAHPTFGRIVDEQSHRILGLISKVLKWQNVKGNIQRRQQDEQFEMLLECNDAIME
RLNSNLDELAGIKKNLKTIVVESHLNVASGKPSSGSGAGSWNLKKNEVSPIAARLITAKN
IARPQLKFKVAVDNSALAPFVPRIKDKPNSLKPLAVLPEYDEHGNIASYLHPYEFELMKL
EVPVTQLKRTNPQVPSKMDETELLYVDTIHKLNTAVEELRKHTEIAIDVEHHSYRTFQGF
TCLVQISTRNKDYLFDALELRDEMHVLNVVFTDPKIVKIFHGADMDIEWLQRDLSLYIVN
MFDTHQAAKALNYARLSLSYLLKHYCDLEVDKTFQLADWRIRPLPKELVAYARQDTHYLL
YIFDRITNDLLDAGNNQPNLLRSIYQRSSEICKKRYVKPHMTADSHMDLYRKSKRIFDNR
QLYALREVFQWRDSIARQEDESYGYVLPNHMLLQISESLPREMQGILACCNPIPPLVRQN
LHVLHQIVLRAREQPLVKPVLETETIHRVATTNSKDYNCKLYCPHDLSHSEEFRDDLPTL
LNFRNDAVISSPAKVDVKMAKPVLSIYETPESTDDDEDQRKQKQLHSAIKFISPYQRYLA
MLPLAEKEKAEEAARIEAENKKRQLCPAANPSPVITKMEIKTEPADDNEYNLPIKEILKR
THEEAIAKKNKSNDSEEPGPKRFKNETPTDDKLKFINLPPTKKELKQANNQAPNTAADTM
TANTSNNSVHTISEDSDSGPEEIPSTSQAQPKQNTPNRQSGKKQMKNKNMKNRQKSYQSS
NKPIDLVKNFDYNSVDFKKFQGGGQRAKGMELKPQFHGKSNSNKANNKKFNKLFTFSNVK
GKK
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctactatagcgacaaaggtcggggaggagactgccacttcggcagagcaagaa
aaaaaagttccgaatgttacatcgcttgggaatttcgcttctgtagaagagtttgcaaag
aatggattagctgaaatcatggtggctaccaaagcgacaaattcctttccccaaggtgcc
gcacgagatttatattgcgcacaccctacctttggtcggattgtggacgaacagtcacat
cgaattcttggattgatatcgaaagttttaaagtggcaaaatgttaagggcaacattcaa
cgccgtcaacaagacgaacagtttgaaatgctcctagaatgcaatgatgctataatggaa
cgtttgaactcaaatttggatgaactcgcaggtattaagaaaaatctaaaaactattgtt
gtagaatcgcatttaaatgtcgcaagtggtaaaccgtcatctggatctggtgctggaagt
tggaatttaaagaaaaatgaagtatcaccaattgccgcacgtttgatcacggcaaaaaat
attgcccgaccacaattgaaatttaaagtagcagtggataatagtgctctagcgccgttc
gttccacgaataaaagataaacccaattcattaaagccgctggctgtgttacccgaatat
gatgaacatggtaatattgcgagttacctacatccatacgagttcgagctgatgaaatta
gaagtccccgtaactcagttgaagcgcacaaatcctcaagtgccctcaaaaatggatgaa
accgaactactttatgtggatacaatacataaattaaatacggcagtggaagaactgcgt
aaacacactgaaatagcaattgatgtggaacatcattcatatcgtacttttcagggtttc
acttgccttgtgcagatctcaacacgcaacaaagattatctcttcgatgctttagagttg
cgcgatgaaatgcacgtacttaatgttgtattcactgatccaaaaatagtgaaaatattc
cacggcgctgatatggatattgagtggctccagcgcgatctttcattgtacatagtgaac
atgtttgatactcatcaagctgccaaggctttaaattatgcgcgtttatccctatcttac
ttgctcaagcattattgtgacctcgaagtcgataaaactttccagttggccgactggcgc
attcgcccattaccaaaagagttggtagcatatgcgcgccaagatacccactatctactc
tatatattcgatcgcataaccaatgatttgcttgacgccggaaacaatcagccaaatttg
ctacgaagcatttaccaacgcagcagcgaaatctgcaagaagcgctatgtaaaaccgcac
atgacagctgactcgcacatggatctttatcgtaagtcaaaacgtatcttcgataatcgg
cagctgtatgcgctacgggaagtgtttcaatggcgtgattcaattgcgcgccaagaagac
gaaagctacggatacgttttacctaatcacatgctgttacaaatttccgaaagtttgcct
cgtgagatgcagggaatactagcgtgctgtaatcctataccgccactggtgcgacaaaac
ctacacgtgctgcatcaaattgtgttgcgagctcgagaacagcctttggtgaagcctgtg
ttggagacagaaacaattcatcgtgtagcaaccactaacagcaaagattacaactgtaag
ttgtattgcccgcacgatctatcacacagcgaagagttccgcgatgatttgccgacactg
ctaaatttccgcaatgacgctgtaatttcatctcctgctaaagttgacgtaaagatggcc
aaacctgtgctgagcatttatgaaacaccggagtccacggatgacgatgaggatcagaga
aagcaaaaacaattacatagcgctataaaattcattagtccatatcaacgctatctggcc
atgctaccattggcggaaaaagaaaaagcggaggaagcggcacgcatcgaggctgaaaat
aaaaaacgtcagttatgtcccgctgcaaatccatcacctgtcataacaaagatggaaatt
aaaactgaaccggctgatgataatgagtataatttaccaattaaagaaatcctcaagcgc
acacatgaagaggcaattgcgaaaaagaacaaatcaaatgattcagaggagcccggtccg
aagcgctttaagaacgaaacacctactgatgataaattgaagtttattaatttaccaccc
actaagaaggaactgaagcaagccaataatcaggcgccgaataccgccgctgataccatg
actgccaatacatctaacaactctgtacatactattagtgaggattcagatagtggacct
gaagagataccgtctacgtcacaagcccaaccgaagcagaacaccccaaataggcagagt
ggcaagaaacagatgaagaacaagaacatgaaaaaccggcaaaagagttatcagtcctct
aataaacccattgatctagttaaaaatttcgactacaatagtgtggactttaagaaattc
caaggaggcggacaacgcgccaagggcatggaactaaagccacaatttcatgggaaaagc
aattccaacaaggctaataataaaaagttcaataagttatttacattcagcaatgtgaaa
ggtaaaaagtag
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