Anastrepha obliqua (West Indian fruit fly): 129246954
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Entry
129246954 CDS
T09777
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129246954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129246954
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129246954
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129246954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129246954
NCBI-ProteinID:
XP_054741695
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All DBs
Position
5:complement(17507572..17517793)
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AA seq
985 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNSNQKEKYEADLKKEIKKLQRLRD
QIKSWIASGEIKDKSQLLENRRLIETQMERFKIVERETKTKAYSKEGLGAAQKMDPAQRI
KDETRNWLTSSISSLQLQIDQYESEIESLLAAKKKRLDRDKQDRMDEFRVKLDRNKFHVM
KLETLLRLLDNDGVEAEQVNKIKDDVEYYIESSQEPNFEENEFLYDDIIGLDDVELSGTG
VSLGIPSSATTDSNNSNETSGSPSSITSGGSPVQSPPPVAGSQQQVQQQCAAAATTASTA
TLTATSNASTAQQQQQQQSNISNNMNYAAEAAAAAAASASANSNIDTAASDKRNKNESNS
SSKAKQPVKPTAVRAANSSGKSSSGSISETSSNKAISSTPNKNHQQQQQQQQPTAAAVVA
AAMAGQTTPSSTTTTANSIGGVPPTLAATVAAAAAMAAGHSPALQQHAPAPSLNTTNVAT
VVGGATTVAATVATNNGSSNSNNIQGQSVIQATPTIAFAAVAKNNTSHLENGPVHPATSY
AMAAPTVASIVGSNVQHQQQQQQQQQQQQLSNLQTNSSHLQNAHSNTSNSNPSNSLANAV
QQGSAAVAAAAAVAAGVVVNNVGSNNLANCISPNGISQVIGAPQQQQQQVIGVANNSTRA
SPGLLSPKHMNGLPVSTANINNNNNNAVDAISLKTMAQEAINRSVIDTNSLTQGPGQQID
NRQQQQAQQSQQVLQHFSTDTTANQQQQQQQLAGGLAAAAVAFAAAAAATNGPTTAGAGP
VGSAVPSGLAGLTNAAVGQPGASNSGVNAPVGSKPHQQPTNEAHITPLLGVAPLGTLPLH
KDHQLQFKMMEAAYYHLPTPADSERLNIYLPRTPVPTPLHYPQQQLPLYDTVEFYQRLST
ETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYIYFD
YEKWSQRKKEGFTFEYKYLEDKELN
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgacgagaaagttgcaaggtgaaatagacagatgtctgaaaaaggttgcggaa
ggagtggaaacattcgaggatatatggaaaaaagtgcataatgctacaaacagtaatcag
aaggaaaaatatgaagcagatcttaaaaaggaaatcaaaaagctacaaaggcttcgagat
cagattaaatcatggattgcatccggggagatcaaagataaaagccagctgctggaaaat
cggcgtctcattgaaacacaaatggaacgtttcaagatcgtagaacgtgaaacgaaaacg
aaagcgtactcgaaagaaggtcttggcgctgcacaaaaaatggatccagctcaacgtatt
aaagatgagactcgtaactggctaacatcgtcaataagttcgttgcaattgcaaatagat
caatacgaaagtgagattgaatcgttattggcggctaaaaagaaacgccttgatcgcgac
aaacaggatcgaatggatgagtttcgtgttaagttggatcgtaataaattccatgttatg
aagctggaaacactgttaagattactcgacaatgatggtgttgaagcggaacaggtgaat
aaaatcaaggatgatgttgaatattacattgaatcctcacaagagccgaatttcgaagag
aatgaatttctttatgatgacattattggcctggacgatgttgaattatctggcacaggt
gtttcacttggtattccatcatcagccactacagacagcaacaacagcaacgagacgagc
ggttcaccgagcagcataacatcgggtggcagtcctgtgcaatcaccaccaccagtagcg
ggctcacagcaacaagtacaacaacagtgtgcggcggcagcgacgacagcatcaactgcg
acgttaacagctacaagtaatgcgtcgacggcgcaacaacaacagcagcagcaaagtaat
atcagcaacaatatgaattatgcagctgaggcagcagcggcggcggcagcgtcagcgtcg
gcgaacagtaatatagacacggcagccagcgataaaaggaacaaaaatgagagtaattct
agtagcaaagcaaaacaacctgttaaacctacggcagtgcgcgcagccaatagcagcgga
aaatcttctagcggttcgatatcagaaacgtcttcaaataaagcgattagttcgacaccc
aacaagaatcatcaacagcagcagcagcaacaacaacctacggctgcagcagtggttgca
gcagccatggctggtcaaaccacgccttcatcaacaacaacaacggcaaatagcataggt
ggtgttccgcccacattagcagccactgttgcagcagccgcagcaatggctgctggtcac
agtcctgcgttgcaacagcatgcgccggcgcctagtttaaatacaacaaacgtagcgaca
gtagtagggggagcgactacggtagccgccactgttgcgactaataacggtagcagcaac
agtaacaacattcaaggccaatctgtgattcaagcgacgccaacgattgcatttgcggct
gtagcgaaaaataacacatcacatcttgaaaatggacctgtgcacccggcgacatcatat
gcgatggcggctccaacggtagcgtccatagtaggctccaatgtgcagcaccagcaacaa
caacagcagcagcaacaacagcaacagttatccaatcttcaaacgaattcctcacattta
caaaacgcgcatagcaacacttccaacagcaacccatccaatagtttagcgaacgcggtt
caacaaggaagtgcagctgtcgcagcagcagccgccgtcgcagccggagtagtggtgaat
aatgttggcagcaataatctggcaaattgcatttccccgaatggtatctcgcaagtaatt
ggagcaccgcaacaacagcaacaacaagttattggtgtagccaataatagcacacgcgct
tcaccgggcttactttcgccgaagcatatgaatggcttgcctgtgtctacggccaacatt
aacaacaacaacaacaacgctgtggatgcaatttcattaaagacgatggctcaagaagct
attaaccgatcggtaatcgacacaaattcattgacgcaaggacctggtcaacaaattgac
aatagacagcagcagcaagcgcagcaatcacaacaggtcttgcagcatttctcaaccgat
acaactgccaatcagcaacagcagcaacaacaactggcgggaggtttggcagcagcagca
gtcgcctttgctgcagcagccgcagcaaccaatgggccgacaacggcgggtgcgggccca
gtcggcagtgcagttcccagtgggctagctggtttaacgaacgcagctgtgggacagcct
ggagctagtaatagcggtgttaatgcacctgtaggtagcaaaccacatcagcaacccaca
aatgaagcgcatataacgcctttattgggcgtagcaccattgggtacattgcctttgcat
aaagatcaccaattgcaattcaaaatgatggaagccgcttactatcatctcccgacgcca
gccgattcggagagattaaatatatacctgccgcgaacgccagtgccgacaccactgcac
tatcctcagcaacagcttccactctacgataccgttgaattttatcaacgactctcaacc
gaaacgctcttctttgttttctattatatggaaggttcgaaggcgcaatatttagcagcg
aaagcattgaaaaagcaaagctggcgatttcacacaaagtacatgatgtggttccaaagg
catgaggaaccaaaaattattaatgatgattacgaacagggtacgtacatctattttgat
tacgagaaatggagtcaacgcaaaaaggagggattcacttttgaatacaagtacttagaa
gacaaggagctgaattga
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