Anastrepha obliqua (West Indian fruit fly): 129247220
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Entry
129247220 CDS
T09777
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aoq03016
]
129247220
Enzymes [BR:
aoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129247220
Transfer RNA biogenesis [BR:
aoq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129247220
Prokaryotic type
tRNA splicing ligases
129247220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
129247220
NCBI-ProteinID:
XP_054742225
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All DBs
Position
5:43105468..43107486
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AA seq
506 aa
AA seq
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MVVRPYNEELKYLEKISDCCWRIKKEFQPNMKVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPTSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQIVDEIYD
KWSASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIETNDRQLACARIN
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFHTTPDDLDMHVIYDVSHNIAKVE
NHIVDGKEKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTERGM
HETFGSTCHGAGRALSRAKSRRNLDYKDVLEKLEEMGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHIAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgaccttataatgaagaattaaaatatcttgagaagatcagcgactgctgc
tggcgaataaaaaaggagtttcagccgaatatgaaagtagaaggctgcttctatgtaaac
agccggctagaacggctcatgttagaagagctaaaaaattcatgtagacctggagccgtt
ggcggctttctgccgggtgtaaagcaaatagcaaatgtcgcagcgttgccgggtattgtg
gggcgttccataggactcccggatattcattctggttatggatttgctatcggaaatatg
gctgcattcgacatgaacgatcctacatcaattgtaagtccgggaggagtcggctttgat
attaactgcggtgtacgattactgcggacaaatcttttcgaaaaagatgttcaaccagtt
aaagaacaattagcgcaatctcttttcgatcatattcctgttggtgttggttctaagggt
attattcccatgaatgcccatgatatggaggaggctctagaaatggggatggattggtct
cttcgtgaaggatatgtttgggcagaagataaagagcattgcgaagaatatgggcgaatg
ctaaatgcagatccatccaaggttagtttacgtgcaaagaaacgtggactacctcaattg
ggaacgttaggtgctggcaaccattatgcagagattcaaattgttgacgaaatatatgat
aaatggagtgctagtaaaatgggtattgaggaaaaaggtcaggtatgcgttatgatacac
tcgggtagtagaggatttggtcaccaagtagcaacagacgccttggttcagatggaaaaa
gcaatgaaacgtgaccagattgagacaaatgatcggcaattagcatgtgctcgaataaat
tcacaggagggccaagattatttgaaagcgatggcagctgcggccaattttgcttgggtt
aatcgcagttcaatgactttcctcactcgacaggctttcgcaaaaatgttccatacaact
ccagacgaccttgatatgcacgtcatttacgatgtttctcataatattgcaaaagtggag
aatcatatcgtcgatggaaaagagaagcaattactcgttcataggaagggatccacacgg
gctttcccaccacatcacccacttattccggtggactatcaactcaccggccaacctgta
ttagtgggcggcacaatgggcacttgcagctacgtgctaactggtaccgagagaggaatg
catgaaacatttggatctacttgccatggtgcggggcgtgcattgtcacgtgctaaatcc
cgacggaatctagactataaagatgtacttgaaaagttagaagaaatgggaatcgctata
cgtgtagcttctcccaagcttgttatggaagaggctccagaatcctataaagatgtgact
gatgtcgttgatacatgtcatattgctggtataagcaaaaaatgtataaaattacgtcca
attgctgtcattaaaggttag
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