Anastrepha obliqua (West Indian fruit fly): 129247481
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Entry
129247481 CDS
T09777
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129247481
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoq00536
]
129247481
Glycosaminoglycan binding proteins [BR:
aoq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129247481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
129247481
NCBI-ProteinID:
XP_054742592
LinkDB
All DBs
Position
5:complement(15819322..15835645)
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AA seq
1864 aa
AA seq
DB search
MIFQWNSMLRKHFNGFIKISFCIVIGLAFFDIDLTVAAESKDDSFVDLIREFGLPDLPPG
IIGVPGICGNERNPYQVYSTPAFRITKDAILTVQTAQSFPNGFPTDFSIILALRSNQTNP
TKAPVFTIYSDESEEVLSLNLGKEISLSYEQTDATFNQRNTINFGIGFSDTNWHRIGVSV
KGKAATLVVDCTKQVTRRLERSRGSTIATNGLILTGVQMTNDEGFFTGDVQLMAIVDSPD
AGYEVCTRYATPCMQQGSFTMERYVSGVGGDADGGRRTGGSWSWSSSSSSSSTGQGSGGA
EGIDLSRSALGIGDGGRSVAGGAASERISGVGSSSQANAPHFQITSSRSYESTPMVNAGG
LVGNLQVGEAQNGQELGAYGTGGSAGNGFPLGGNSAESGATGSASAALPFDEQGFEDYAI
EGNEGVDFNTYVDLTTPTTLEAPDTIDDTDNKDTRKQVDDDAKERRVNSTDADATDVNRK
PDRRKNGSRTNSTDPSYVIGGGNTICYPGPRGYTGTPGPPGEPGYKGEAGRDGLAGTPGI
QGPPGHVFVVPHAQGGNEKGPDSQAEALRQMISQHMMALRGPEGPMGLTGLPGPPGVPGQ
RGDKGEPGDVGEPGLRGLRGPVGSPGRDGRRGRSGRDGERGSVGPQGPKGEIGRMGPIGL
PGEKGHRGLPGITGEKGQQGVEGHPGEEGPPGLPGLPGELGPRGFPGPRGFPGPAGNPGL
QGAEGPQGAKGSTGLMGPSGPPGQIGANGPPGAPGPQGNLGPPGIAGPPGKPGLPGLPGA
DGAPGHAGTPGAIGPKGDQGMQGVQGPVGFPGPRGLKGDDGQRGSPGDKGDNGERGLDGE
KGDAGLPGERGTPGAPGSPGPEGPEGPKGFEGPRGETGSQGSTGEKGKQGPQGFQGYPGP
SGDKGDKGATGTAGPVGIKGERGLQGQSGERGEMGPRGFRGSRGRRGGDGSPGPKGDTGQ
PGAPGLQGETGPQGTEGPRGFIGLPGSPGADGKNGVMGPPGERGQPGEPGKPGPPGESGV
IGPRGAPGELGPIGEPGIPGLPGLPGEAGLPGEAGKEGPPGPIGPIGLPGPQGPTGLPGF
PGERGHQGQPGLPGLKGEQGLLGGPGYPGDKGQTGEPGHPGAQGPPGNPGPPGSAGSPGA
KGEPGDKGPIGPSGRDGLTGMRGLPGPPGPQGTPGEDGDKGETGPPGEKGLKGNRGEIGP
IGSTGAQGPRGESGPPGPPGEKGPPGEAGRRGIKGEDGKPGPPGPLGKPGIQGLPGPAGL
KGERGDDGLMGPIGPPGSPGEQGRRGLKGAPGQQGKPGPHGPQGITGADGPQGPPGAVGP
TGKPGETGPAGPKGEQGKSGPIGPPGRIGMQGQEGPKGAVGPRGYPGARGEPGLMGPKGD
VGAVGEDGKPGEQGPIGDMGPEGRIGEPGPPGRQGPEGPAGLQGSPGPIGDKGDKGDLGS
QGPQGILGPQGLPGLQGPPGRRGLPGEVGETGVPGPEGVPGKEGSIGEPGPAGPKGDRGR
RGPKGHRGELGMVGLKGDQGEKGDRGFRGPHGPEGRKGEPGLVGPIGPKGNDGPQGPPGT
NGPPGPKGTEGPAGNKGDMGPPGPAGPPGAPAEAPLIPPELLFQMQQYSTTKAEIRRRRD
VDILDDLKPSAHSDSSGKLVDMYSAIYSMRQEMDRMRKPTGTQDNPVRTCRDLHYAHPQF
ENGWYWIDPNAGMPDDAIYVYCNMSADGETCIYPDAHTAEAPVVPRRSSGSPDWYSRLSD
GAKIAYDGVGTVQLTFLRLLAEEGYQNFTYECRNSVAWYSEADGGYTKALRLLGENEMEI
AREGTPIQPEVLRDECQKPNTLGETVLLVRTQRLNYLPLVDFYPQDYARLDQAFGFKVGP
ACFK
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcaatggaattccatgcttcgaaaacatttcaatggatttataaagattagc
ttctgcatcgtcattggcttggcattttttgatatcgacttaacagtggcagcggaatct
aaggatgatagctttgtggacttgattcgcgaattcggcctacccgatctgccgcccggc
atcattggagtgccgggtatctgcggcaacgaacgtaatccctatcaggtgtacagtacg
ccggcttttcgcatcaccaaagatgccatactcaccgtacaaaccgcacaatccttccct
aatggctttcctacggacttttcaatcattttggctctgcgcagtaatcaaacgaaccca
acaaaagcgcccgttttcactatatattcggacgagagtgaggaggtgctctcgcttaat
ctgggcaaagagattagtcttagttatgaacaaaccgatgctacattcaatcaacgtaat
accattaattttggcattggctttagtgacacgaattggcatcgcatcggtgtaagtgta
aaggggaaggcggcaactttggtagtggattgtacgaaacaggtgacgcgacgtttggaa
cgttctcgcggcagtactatcgctacaaatgggctaatacttaccggcgtacaaatgaca
aatgacgagggattttttaccggcgatgtgcaactgatggccattgtagatagtccagat
gcgggttatgaggtgtgcacgcggtatgcgacaccgtgtatgcaacaaggcagctttacg
atggagcggtacgtaagcggtgtaggtggtgatgcagatggtggcagacgtacaggtggc
agttggtcgtggtcatcatcgagcagcagcagcagtactggtcagggaagtggtggtgcg
gaaggcattgatttgagcagatctgcgctgggtattggtgatggtggaaggagcgtagct
ggtggagcggcaagtgaacggattagtggtgtaggcagcagctcgcaagcgaatgcacca
catttccaaatcaccagttcccgaagctatgaatctaccccaatggttaatgcaggaggt
ttagttggaaaccttcaagtaggcgaggctcaaaatggtcaagagttgggagcttatggt
actggcggcagtgcgggtaatggattcccgcttggcggaaattctgctgaatctggcgct
accggcagtgcaagtgctgcgctaccattcgatgagcaaggttttgaggattatgccatt
gagggtaatgaaggtgtagattttaacacatacgtagatcttacaacacccacgacactt
gaagctcctgacacaattgatgacaccgataataaagatacaaggaagcaggtagacgat
gatgcaaaagaacgtcgtgtgaactccacggatgctgacgcaacagatgttaatcgtaag
ccagataggcgtaaaaacggctcgagaacgaattctacagatccaagttatgtcatcggc
ggtggtaatacaatctgctaccccggtccgaggggctatactggcactccaggaccacca
ggcgaaccgggctataagggtgaagctggccgcgatggcttggctggcactccaggtatt
caaggaccaccagggcatgtttttgttgttccgcatgcccaagggggcaatgagaagggt
ccagactcacaagctgaagccctaaggcaaatgatatcccagcacatgatggctttacgt
ggtccggaaggtcctatgggtcttacaggactgccaggcccccctggtgtgcccggtcag
cgtggcgataagggtgaacccggcgatgttggtgaaccgggcttacgtggtttgcgtgga
cctgttggttcgccgggccgtgatggacgacgcggtcgttctggaagagatggtgaacgt
ggctctgtgggaccacagggaccgaaaggtgaaatcggacgaatgggtccgattggtttg
ccaggtgaaaagggacatcgaggtttgccaggtataactggtgaaaagggtcaacaaggt
gtcgaaggtcacccgggagaagagggtccgccaggtttgcctggtttaccaggtgaattg
ggtcctcgtggatttccaggaccgcgcggtttcccaggtcctgctggtaatccaggcttg
cagggtgcagaaggaccccaaggtgccaagggcagcactggtttaatgggcccatctggc
cctccaggacaaattggtgcaaatggtcctcctggggcacctggtccgcaaggcaatctt
ggtccaccaggcatagctggaccacccggtaaacctggccttcctggtttgcctggagct
gatggtgctccaggtcatgcgggtacaccgggcgcaatcggtccaaaaggtgaccaaggc
atgcagggtgttcaaggacctgtaggttttcctggtcctcgtggtctcaaaggtgatgat
ggtcaacgcggttcaccaggtgataaaggtgataatggcgaaagagggttagatggtgaa
aaaggtgatgctggtttgcctggtgaacgtggaactcctggtgcacccggcagtccaggt
ccagaaggtcccgaaggtccaaaaggttttgaaggtcctcgaggtgaaacaggatcacaa
ggctcaaccggcgaaaagggcaaacaggggccacaaggatttcaaggttaccctggtccg
tctggtgataagggtgataaaggagcgactggtactgcagggccagtgggtataaaaggc
gagcgagggttacaagggcaatcaggtgagcgcggtgagatgggtcctagaggttttcgt
ggttcaagaggaagacgaggtggtgatggcagtccaggtccaaaaggcgacacaggccaa
ccaggtgcacccggtcttcaaggcgaaactggacctcagggtacagagggtcctcgtggt
tttattggtttgccgggttcaccaggcgcagatggcaaaaatggtgtcatgggccctcct
ggcgagcggggacaacctggagaaccaggaaaacccgggcctcctggagagtctggcgtc
ataggtccacgtggtgctcctggtgagctaggtcctatcggcgaacccggtataccaggc
cttccaggtttgccgggagaagccggtttaccgggcgaggctggcaaagaaggccccccc
ggcccaatcgggccaattggactacccgggccacaaggtcctaccggacttcctggattc
cccggagagcgtggccatcaagggcaaccaggacttcccgggcttaaaggagagcaaggt
ttgctaggtggtcccggatatcctggtgacaagggtcagacgggcgaaccaggtcatcct
ggtgcacaaggtccacctggaaacccaggaccaccgggtagtgccggctcaccaggggcc
aaaggtgaacccggagataaaggacctatcggaccatctggtagagacggtttaactggt
atgcgaggtttaccaggaccaccaggtccacaaggcacgcctggagaagatggtgataaa
ggagagaccgggccgcctggtgaaaagggtttgaaaggaaatagaggcgaaattggtcca
attggctcaacaggagcccagggaccgcgcggagagtctggaccacctggaccaccagga
gaaaagggcccaccaggagaagctgggcgaagaggcataaaaggagaagatgggaaacca
ggtccaccaggaccactaggaaaaccaggcattcaaggtttgccaggaccagctggcctt
aagggtgagcgaggtgatgatggactaatgggcccaataggacctccgggttctccagga
gagcaaggcagacgaggattgaaaggtgctcctggacagcaagggaaaccgggaccacat
ggcccacaaggaataaccggagcagatggtcctcaaggaccaccaggagcagtaggtcct
acaggtaaaccaggcgagacagggccagcaggacccaaaggagaacaaggcaaatctgga
ccaattggcccacctggccgtataggcatgcagggccaggagggtccaaaaggagctgtg
gggccacgcggctatccaggcgcaagaggcgaaccgggtttgatgggtccaaaaggcgac
gtaggagctgttggcgaagatggtaaacctggcgagcaaggcccaatcggagatatgggt
ccggaaggtaggattggggagccaggcccaccaggacggcaagggccagaaggacctgca
ggtttgcaaggcagtcccggaccgattggcgataaaggagataaaggggatctgggatcg
cagggtccacaaggaattttaggtccgcagggtctaccaggtttgcaagggccgccaggt
aggagagggctgccaggcgaagttggtgaaacaggtgtgccaggtccagagggagtgcca
ggaaaggagggcagcattggtgaacccggaccggcaggacccaaaggtgaccgcggcaga
cgtggtccaaaaggacatcgtggagagttaggtatggtgggcctgaagggtgatcaaggc
gagaaaggtgatcgcggttttcgtggaccacatggaccagaaggacgcaaaggcgaacca
gggttagtaggacccattggacccaagggcaatgatggcccacagggaccacctggaaca
aacggaccgcccggaccgaaaggaacagaaggaccagctggcaataaaggtgacatggga
ccaccaggaccagctggaccgcctggcgcaccagctgaggcaccactaataccacccgaa
ctgcttttccaaatgcaacaatactccaccacaaaagcggaaatacgaagacgacgcgat
gttgatatactcgacgatttaaaacccagcgctcatagcgattcgagtggcaaattggtg
gacatgtacagcgccatctacagcatgcgacaagaaatggatcggatgcgcaaaccaacc
ggtacacaagacaacccggtgcgtacgtgccgtgatctgcactatgcacatccacaattc
gagaacggctggtactggatcgatccgaatgcaggcatgcccgatgatgccatctacgtg
tactgcaacatgagcgccgacggtgagacatgcatttacccagacgcacacactgccgaa
gcgccagtggtgccgcggcgttcatctggcagcccagactggtactctcgtcttagtgat
ggcgcgaaaatcgcatatgacggtgtgggcacagttcaattgaccttcttgcgtttgctc
gccgaggagggatatcagaatttcacatatgaatgcagaaattcagtggcttggtacagt
gaagcggacggtggctatacgaaggcgctgcggctgttgggcgaaaacgaaatggaaatc
gcacgcgaaggcacgcctatacaacccgaagtgttgcgggatgagtgtcagaagcccaac
acgctaggcgagacagtgttgctggtgcgcacacaacgcctcaactatctgccattggtg
gacttctacccgcaggactatgcgcgattggatcaagcgtttggctttaaggtgggaccg
gcgtgctttaaatga
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