KEGG   Anastrepha obliqua (West Indian fruit fly): 129247788
Entry
129247788         CDS       T09777                                 
Name
(RefSeq) exosome RNA helicase MTR4-like
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
aoq  Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aoq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129247788
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoq03019]
    129247788
   03041 Spliceosome [BR:aoq03041]
    129247788
   03009 Ribosome biogenesis [BR:aoq03009]
    129247788
   03016 Transfer RNA biogenesis [BR:aoq03016]
    129247788
Enzymes [BR:aoq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     129247788
Messenger RNA biogenesis [BR:aoq03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     129247788
Spliceosome [BR:aoq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    129247788
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    129247788
Ribosome biogenesis [BR:aoq03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    129247788
Transfer RNA biogenesis [BR:aoq03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    129247788
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII ATPase_2
Other DBs
NCBI-GeneID: 129247788
NCBI-ProteinID: XP_054743075
LinkDB
Position
5:complement(42558063..42562157)
AA seq 1032 aa
MADVDDLFDCFNEDNEESVNINPVVELDKVEADSSTEKGKADIGDKRGIASVKELKEDVE
IPQKRLKETESILDDICVDALRSRIAVHVIESPESCTHEVAVYPGQEYIPLQSITGPPAK
EYPFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKAL
SNQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEI
HYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGINLIVDETGQFKEDNFKIAMAVLQNAGEADKGDQKGRKTGIRGVDSG
QLNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTAEEKRLVDEVFNNAMDV
LSEEDRQLPQVENVLPLLKRGIGIHHGGLLPILKEIIEILFGKGLLKALFATETFAMGLN
LPARTVLFTAPRKFDGKNFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEEVSPSIGRG
IVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQDKQS
ELEKIKIKEEHSVASYHHIREQLDSYGKQFKRWITKPEYLLPFLQPGRLIKVQNDKEEFD
WGIVVNFKKQTNNARNPMKAETVIVVDVLLHVTEESAEESAKADEPKQCKPGKGNMEVVP
VLHTLISQISSLRVLYPNDLGPADNRRSVLKTIAAMKKRFPKGPPLLNPVTEMNIKSAEF
KQVVESIDKFEERLFAHPLHNSSELNKIYECYTQKIKVQEELKEVKTKLKEARSLLQMDE
LKHRKRVLRRMEYCTAADVIEFKGRVACELSSADELLITEMIFNGIFNDITTPQAVALLS
CFVCDEKSSETPKATEELSGPLRSMQDLARRIAKISTECKLSIDEESYVEKFKPFLMDVV
LAWCKGASFLSVCRMTDIFEGSIIRCMRRLEELLRQLCQSAKTIGNTELENKFSEGVRLL
KRDIVFAASLYL
NT seq 3099 nt   +upstreamnt  +downstreamnt
atggcggatgtcgatgatttgtttgactgtttcaatgaggacaatgaagaaagtgtaaat
atcaacccagtggtagaattagacaaagtggaagcagacagttcaactgagaaagggaaa
gctgacatcggtgacaaacgaggaatcgcttcagttaaagaattaaaagaagatgtagag
attccacaaaaaaggctgaaagaaactgaatcgatattggacgatatttgcgttgacgca
ttacgttcccgtatagccgttcacgttatcgaaagtccggagtcatgcacgcatgaagtg
gcagtatatccaggtcaagaatatattcccttacaatctatcacaggaccaccagcaaaa
gagtacccatttgtattggatccttttcaaaaagaagcaatcttgtgcattgacaatcaa
cagagtgttttagtatcagctcacacatcggcaggaaagaccgtggtagccgaatatgct
attgcgaaatcgttaggctgcaaacagcgagtaatttataccacacccattaaggcgcta
tctaatcaaaagtatcgagaattcaatgaagaattcaaagatgttggactagttaccggt
gatgtgacgataaatccatcggcgtcttgtcttatcatgaccacagaaattttgcggaat
atgttgtacagaggaagtgaaattatgcgtgaggttggttgggtcgtattcgatgaaatt
cattatatgcgagacaaagagcgaggtgttgtatgggaagagacattaatattattgccc
gataatgtgcgctatgtatttctttccgccactattcccaatgcccgccaatttgcagaa
tgggtttgtcacctccacaagcaaccgtgtcatgtagtttatacagattaccgacccacc
ccgctacaacattatatattccctgctggtggcgatggcataaatcttatagtcgatgaa
acaggacaattcaaggaagataattttaaaatagcaatggccgttttacaaaacgctggt
gaagcagataaaggcgaccaaaaagggcgtaaaactggtattagaggcgttgacagtggc
cagttaaatatttttaaaatagtcaaaatgataatggaacgtaactttgcaccagtaatc
attttttcatttagtaaaaaagattgcgaggtgtacgctatgcagatggcaaagttagat
ttcaatactgctgaagagaaaagactagttgatgaagtattcaacaatgctatggatgta
ctctctgaagaggatcgtcaactaccacaggtggagaatgtattaccgttgttgaaacgg
ggtattggtatacatcatggtggtctcttgcctattctcaaagaaattattgaaattttg
tttggtaaaggcttacttaaagcgctttttgcgactgaaacatttgctatgggcttaaac
ttgcctgctcggactgtacttttcacagcaccgcgcaaattcgatggaaaaaactttagg
tggatttcctcaggtgaatatatacaaatggccggtagagctggtcgtcgtggtctggac
gataaaggtattgttatcttaatgattgacgaggaagtctcaccatcaattggtcgtggc
attgtgcaaggaaaagcggatcccataaattcagcgttccatttaacttacaatatggtg
ctgaatttgctgcgtgtcgaagaaattaatcctgaatatatgttagagcgttcattcttt
cagttccagaatcaatcctcaatacccgaactgtataagcaagttcaggataagcaatcg
gagttggaaaagattaaaattaaagaagagcatagtgttgcatcctaccatcatatacgt
gaacaactcgattcttatggcaaacaattcaagcgctggattacgaaacctgaatatctt
ttgccatttttgcagcctggtcgtctaataaaagttcaaaacgataaagaagaatttgat
tggggtatagttgtaaattttaaaaagcaaacaaataatgcacgaaatcctatgaaagcc
gagacagttatcgtagtcgatgtcttactacacgttaccgaggaatcggcggaggaatcg
gcgaaagcagatgaacctaaacaatgcaaacctgggaaggggaatatggaagttgttcct
gtgcttcacactcttatatcacaaatctcttctctccgcgtattgtatccaaatgatctg
ggaccggctgataatcggcgtagtgtcttgaaaactatcgctgcaatgaaaaaacgtttt
cctaaaggaccacccctccttaatcctgttaccgaaatgaatataaaaagtgctgaattc
aaacaggttgtcgaatctatcgataagttcgaagaaagactcttcgcacatccgttgcat
aactcttctgaactgaacaaaatttatgaatgctacacccaaaaaataaaagtacaagaa
gaacttaaagaggtaaaaacaaagttgaaagaggcgcgcagtttgttacagatggacgag
ctgaaacaccgaaagcgtgtattgcgtcgtatggaatattgtacagcagctgatgtgatt
gagtttaaaggacgtgttgcttgcgagttaagctctgcagatgaactgctaataacagaa
atgatattcaatggaatttttaatgatattacaacaccacaggcagtggcactactgtcc
tgtttcgtttgcgatgaaaagtcgtcagaaacccctaaggcgacggaagagctgtcgggt
ccactacgatcaatgcaggatctggctcgacgtattgccaaaatttcaactgaatgcaag
ttaagtatagacgaggagagttacgtggaaaaattcaaaccatttcttatggatgtagtg
ttggcttggtgtaaaggtgcctcgtttttgagtgtctgcagaatgacagatattttcgaa
ggttcaataattcgctgtatgcgtcgtttagaagaattattgaggcagttgtgtcaatca
gccaaaacaattggtaacacagaattggaaaacaaattctccgaaggtgtaaggctccta
aaaagggatatagtttttgcggcttctttatatttgtaa

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