Anastrepha obliqua (West Indian fruit fly): 129247788
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Entry
129247788 CDS
T09777
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129247788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129247788
03041 Spliceosome [BR:
aoq03041
]
129247788
03009 Ribosome biogenesis [BR:
aoq03009
]
129247788
03016 Transfer RNA biogenesis [BR:
aoq03016
]
129247788
Enzymes [BR:
aoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129247788
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129247788
Spliceosome [BR:
aoq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129247788
Complex C
U4/U6.U5 tri-SnRNP related factors
129247788
Ribosome biogenesis [BR:
aoq03009
]
Eukaryotic type
Pre-60S particles
Helicases
129247788
Transfer RNA biogenesis [BR:
aoq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129247788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
129247788
NCBI-ProteinID:
XP_054743075
LinkDB
All DBs
Position
5:complement(42558063..42562157)
Genome browser
AA seq
1032 aa
AA seq
DB search
MADVDDLFDCFNEDNEESVNINPVVELDKVEADSSTEKGKADIGDKRGIASVKELKEDVE
IPQKRLKETESILDDICVDALRSRIAVHVIESPESCTHEVAVYPGQEYIPLQSITGPPAK
EYPFVLDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLGCKQRVIYTTPIKAL
SNQKYREFNEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEI
HYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGINLIVDETGQFKEDNFKIAMAVLQNAGEADKGDQKGRKTGIRGVDSG
QLNIFKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTAEEKRLVDEVFNNAMDV
LSEEDRQLPQVENVLPLLKRGIGIHHGGLLPILKEIIEILFGKGLLKALFATETFAMGLN
LPARTVLFTAPRKFDGKNFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEEVSPSIGRG
IVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYKQVQDKQS
ELEKIKIKEEHSVASYHHIREQLDSYGKQFKRWITKPEYLLPFLQPGRLIKVQNDKEEFD
WGIVVNFKKQTNNARNPMKAETVIVVDVLLHVTEESAEESAKADEPKQCKPGKGNMEVVP
VLHTLISQISSLRVLYPNDLGPADNRRSVLKTIAAMKKRFPKGPPLLNPVTEMNIKSAEF
KQVVESIDKFEERLFAHPLHNSSELNKIYECYTQKIKVQEELKEVKTKLKEARSLLQMDE
LKHRKRVLRRMEYCTAADVIEFKGRVACELSSADELLITEMIFNGIFNDITTPQAVALLS
CFVCDEKSSETPKATEELSGPLRSMQDLARRIAKISTECKLSIDEESYVEKFKPFLMDVV
LAWCKGASFLSVCRMTDIFEGSIIRCMRRLEELLRQLCQSAKTIGNTELENKFSEGVRLL
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtcgatgatttgtttgactgtttcaatgaggacaatgaagaaagtgtaaat
atcaacccagtggtagaattagacaaagtggaagcagacagttcaactgagaaagggaaa
gctgacatcggtgacaaacgaggaatcgcttcagttaaagaattaaaagaagatgtagag
attccacaaaaaaggctgaaagaaactgaatcgatattggacgatatttgcgttgacgca
ttacgttcccgtatagccgttcacgttatcgaaagtccggagtcatgcacgcatgaagtg
gcagtatatccaggtcaagaatatattcccttacaatctatcacaggaccaccagcaaaa
gagtacccatttgtattggatccttttcaaaaagaagcaatcttgtgcattgacaatcaa
cagagtgttttagtatcagctcacacatcggcaggaaagaccgtggtagccgaatatgct
attgcgaaatcgttaggctgcaaacagcgagtaatttataccacacccattaaggcgcta
tctaatcaaaagtatcgagaattcaatgaagaattcaaagatgttggactagttaccggt
gatgtgacgataaatccatcggcgtcttgtcttatcatgaccacagaaattttgcggaat
atgttgtacagaggaagtgaaattatgcgtgaggttggttgggtcgtattcgatgaaatt
cattatatgcgagacaaagagcgaggtgttgtatgggaagagacattaatattattgccc
gataatgtgcgctatgtatttctttccgccactattcccaatgcccgccaatttgcagaa
tgggtttgtcacctccacaagcaaccgtgtcatgtagtttatacagattaccgacccacc
ccgctacaacattatatattccctgctggtggcgatggcataaatcttatagtcgatgaa
acaggacaattcaaggaagataattttaaaatagcaatggccgttttacaaaacgctggt
gaagcagataaaggcgaccaaaaagggcgtaaaactggtattagaggcgttgacagtggc
cagttaaatatttttaaaatagtcaaaatgataatggaacgtaactttgcaccagtaatc
attttttcatttagtaaaaaagattgcgaggtgtacgctatgcagatggcaaagttagat
ttcaatactgctgaagagaaaagactagttgatgaagtattcaacaatgctatggatgta
ctctctgaagaggatcgtcaactaccacaggtggagaatgtattaccgttgttgaaacgg
ggtattggtatacatcatggtggtctcttgcctattctcaaagaaattattgaaattttg
tttggtaaaggcttacttaaagcgctttttgcgactgaaacatttgctatgggcttaaac
ttgcctgctcggactgtacttttcacagcaccgcgcaaattcgatggaaaaaactttagg
tggatttcctcaggtgaatatatacaaatggccggtagagctggtcgtcgtggtctggac
gataaaggtattgttatcttaatgattgacgaggaagtctcaccatcaattggtcgtggc
attgtgcaaggaaaagcggatcccataaattcagcgttccatttaacttacaatatggtg
ctgaatttgctgcgtgtcgaagaaattaatcctgaatatatgttagagcgttcattcttt
cagttccagaatcaatcctcaatacccgaactgtataagcaagttcaggataagcaatcg
gagttggaaaagattaaaattaaagaagagcatagtgttgcatcctaccatcatatacgt
gaacaactcgattcttatggcaaacaattcaagcgctggattacgaaacctgaatatctt
ttgccatttttgcagcctggtcgtctaataaaagttcaaaacgataaagaagaatttgat
tggggtatagttgtaaattttaaaaagcaaacaaataatgcacgaaatcctatgaaagcc
gagacagttatcgtagtcgatgtcttactacacgttaccgaggaatcggcggaggaatcg
gcgaaagcagatgaacctaaacaatgcaaacctgggaaggggaatatggaagttgttcct
gtgcttcacactcttatatcacaaatctcttctctccgcgtattgtatccaaatgatctg
ggaccggctgataatcggcgtagtgtcttgaaaactatcgctgcaatgaaaaaacgtttt
cctaaaggaccacccctccttaatcctgttaccgaaatgaatataaaaagtgctgaattc
aaacaggttgtcgaatctatcgataagttcgaagaaagactcttcgcacatccgttgcat
aactcttctgaactgaacaaaatttatgaatgctacacccaaaaaataaaagtacaagaa
gaacttaaagaggtaaaaacaaagttgaaagaggcgcgcagtttgttacagatggacgag
ctgaaacaccgaaagcgtgtattgcgtcgtatggaatattgtacagcagctgatgtgatt
gagtttaaaggacgtgttgcttgcgagttaagctctgcagatgaactgctaataacagaa
atgatattcaatggaatttttaatgatattacaacaccacaggcagtggcactactgtcc
tgtttcgtttgcgatgaaaagtcgtcagaaacccctaaggcgacggaagagctgtcgggt
ccactacgatcaatgcaggatctggctcgacgtattgccaaaatttcaactgaatgcaag
ttaagtatagacgaggagagttacgtggaaaaattcaaaccatttcttatggatgtagtg
ttggcttggtgtaaaggtgcctcgtttttgagtgtctgcagaatgacagatattttcgaa
ggttcaataattcgctgtatgcgtcgtttagaagaattattgaggcagttgtgtcaatca
gccaaaacaattggtaacacagaattggaaaacaaattctccgaaggtgtaaggctccta
aaaagggatatagtttttgcggcttctttatatttgtaa
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